Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACJROX_RS20365 Genome accession   NZ_CP174509
Coordinates   3961463..3963766 (-) Length   767 a.a.
NCBI ID   WP_408007031.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. A8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3956463..3968766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJROX_RS20350 (ACJROX_20350) - 3959260..3960315 (-) 1056 WP_408007029.1 AI-2E family transporter -
  ACJROX_RS20355 (ACJROX_20355) - 3961036..3961185 (-) 150 WP_408007030.1 hypothetical protein -
  ACJROX_RS20360 (ACJROX_20360) - 3961210..3961398 (-) 189 WP_225064065.1 hypothetical protein -
  ACJROX_RS20365 (ACJROX_20365) recD2 3961463..3963766 (-) 2304 WP_408007031.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACJROX_RS20370 (ACJROX_20370) - 3963779..3964456 (-) 678 WP_408007032.1 tetratricopeptide repeat protein -
  ACJROX_RS20375 (ACJROX_20375) mnmA 3964563..3965675 (-) 1113 WP_408007033.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACJROX_RS20380 (ACJROX_20380) - 3965692..3966834 (-) 1143 WP_408007034.1 cysteine desulfurase family protein -
  ACJROX_RS20385 (ACJROX_20385) cymR 3967199..3967621 (-) 423 WP_408007035.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 767 a.a.        Molecular weight: 87101.25 Da        Isoelectric Point: 4.8599

>NTDB_id=1077548 ACJROX_RS20365 WP_408007031.1 3961463..3963766(-) (recD2) [Pseudalkalibacillus sp. A8]
MELQSHFDLKTDEKRYVKGSVLHVIYQNNETFYSVLKVSTKESNLAGIEKEMIMVGTFPVLMEEETYIFWGDVKDHPKYG
KQFVVEFYRKDLPRTEDGMVQYLSSDLFNGIGKKTAEKVIRTLGEDAFSKIIEDPDVLNEVKDLSEERARTIYETLMEHQ
GLEQLLSTLHRYGIGPAIAMKIYQSYKDEAISIIQSNPYQLIYDIDGIGFRRADELGNALGIEETSSERVQAGLLYNLKE
LCNQHGHTYIEVDELIEETKELLFTKPLDFEMDFYSEIVSLHGAGKVIIKDENAYLPSLYFAEYGLLQKLERLLKQDEYD
RIELSDFYNALGTLEETQGIEYAEAQKDAIYKALTSPMMILTGGPGTGKTTVIKGIIETYAEIHGLSLDIHNYKDDDFPF
LLVAPTGRAAKRMSESTGLPAVTIHRLLGWKGGSGFEYHEENPIAGRLLIIDEMSMVDVRLAYRLFDALPEEIQVIMVGD
EDQLPSVSPGQVLKDFISSKVIPTVRLDEIYRQAKGSTIVQLAHEMKKGGLPQDLKDPQHDRRFFPCSQDQVTKAVLQVC
KSAMTKGYTARDVQVLAPMYRGRAGIDELNKELQSMFNPSHDQKKEIEYFQTVYRVGDKVLQLVNVPEEQIFNGDIGEIV
SIIYAKETADKEEQIVVSFDGIEVTFKKTDLNQITHAYCCSIHKSQGSEFPIVVLPIVKGYYRMLRRNLIYTAVTRSKEY
LILCGEMDALERAVQQNDSGTRNSHLSRKLRDTVETSLINGTKSESV

Nucleotide


Download         Length: 2304 bp        

>NTDB_id=1077548 ACJROX_RS20365 WP_408007031.1 3961463..3963766(-) (recD2) [Pseudalkalibacillus sp. A8]
ATGGAGTTACAAAGCCATTTTGATTTAAAAACAGATGAAAAACGATATGTGAAAGGTTCAGTTCTTCATGTCATCTATCA
AAATAATGAAACCTTTTATTCTGTATTGAAGGTATCCACAAAAGAATCCAATTTAGCCGGAATAGAAAAAGAAATGATCA
TGGTAGGCACATTCCCTGTGTTGATGGAAGAAGAGACGTATATTTTCTGGGGGGATGTGAAAGACCATCCAAAATACGGG
AAACAGTTTGTCGTGGAATTTTACAGAAAAGATCTCCCTCGGACTGAAGATGGCATGGTTCAATACCTTTCCAGTGATTT
GTTCAACGGAATTGGGAAAAAGACGGCGGAAAAGGTCATTCGTACACTTGGTGAAGATGCTTTTTCAAAAATCATCGAAG
ATCCCGATGTTTTGAATGAGGTCAAGGATTTGTCGGAAGAACGCGCAAGGACCATTTATGAAACGTTGATGGAACACCAA
GGTCTTGAACAGCTTTTGAGTACCTTGCATCGATACGGGATCGGGCCTGCCATTGCGATGAAAATCTACCAGTCTTATAA
AGACGAAGCCATTTCTATCATCCAGTCGAATCCATATCAACTGATTTATGATATTGACGGGATCGGTTTTCGCAGAGCGG
ATGAGCTCGGAAATGCTTTAGGGATTGAGGAAACATCATCCGAGCGTGTTCAAGCAGGTCTTCTTTATAACCTGAAAGAA
CTCTGCAACCAGCACGGACATACATATATAGAAGTTGATGAACTGATTGAAGAAACAAAAGAACTGCTCTTTACCAAGCC
GCTGGACTTTGAAATGGATTTTTACAGCGAGATCGTCTCCTTACACGGTGCCGGGAAAGTGATCATCAAGGATGAAAACG
CGTATCTGCCTTCTCTTTATTTTGCTGAATATGGTCTTCTCCAAAAGCTTGAACGTTTATTGAAACAAGACGAATATGAC
CGGATAGAACTGTCTGACTTCTACAATGCACTCGGGACGCTTGAAGAAACCCAGGGAATCGAATATGCTGAGGCCCAGAA
GGATGCAATCTATAAGGCGCTCACTTCCCCTATGATGATTTTGACAGGGGGTCCTGGTACTGGGAAAACCACAGTCATCA
AAGGAATCATTGAAACGTACGCCGAAATTCATGGGCTTTCGTTGGATATCCATAATTACAAGGATGACGATTTCCCATTC
TTACTCGTCGCGCCGACCGGTCGTGCCGCCAAACGGATGAGTGAATCTACCGGACTTCCAGCAGTAACGATACATCGCTT
GCTCGGCTGGAAAGGTGGCAGTGGATTTGAATATCATGAAGAAAATCCGATTGCCGGGCGGCTTCTGATCATTGATGAAA
TGTCCATGGTCGATGTACGACTTGCTTATCGTTTATTTGATGCTTTACCTGAAGAGATCCAGGTGATTATGGTAGGAGAT
GAAGATCAGCTTCCATCTGTAAGCCCAGGACAGGTCTTGAAGGATTTTATCAGTTCAAAAGTAATACCGACCGTGCGGCT
TGATGAAATTTATCGACAAGCAAAAGGGTCGACCATTGTACAGTTGGCTCATGAAATGAAAAAAGGCGGTTTGCCACAGG
ATCTCAAGGATCCTCAACACGATCGCCGTTTTTTTCCATGTTCGCAAGATCAAGTTACAAAAGCGGTCCTTCAAGTTTGT
AAAAGTGCCATGACAAAAGGATATACAGCCAGGGATGTCCAAGTTTTAGCACCGATGTACCGCGGACGCGCTGGAATAGA
TGAACTTAACAAAGAATTGCAGTCAATGTTCAATCCTTCTCATGACCAAAAGAAAGAAATCGAGTATTTTCAAACGGTCT
ACCGTGTAGGTGATAAAGTTCTCCAGCTAGTCAATGTACCAGAAGAGCAGATCTTCAATGGGGATATAGGAGAAATCGTT
TCGATCATCTATGCAAAAGAAACGGCCGATAAAGAAGAACAGATTGTGGTTTCCTTTGACGGAATTGAAGTGACCTTCAA
AAAGACAGATCTCAACCAGATCACCCATGCTTATTGCTGTTCCATCCATAAATCGCAAGGAAGCGAGTTTCCGATTGTCG
TATTACCGATTGTAAAAGGATATTATCGGATGCTGCGCCGTAATTTGATTTACACTGCAGTAACGAGAAGCAAAGAGTAT
TTGATTCTTTGCGGCGAAATGGATGCGCTGGAAAGAGCGGTGCAGCAAAATGATTCAGGGACTCGCAACTCCCATCTCAG
TAGAAAACTAAGAGATACAGTTGAAACCTCCCTTATAAACGGGACTAAAAGTGAGAGCGTATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(342-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

55.395

99.087

0.549

Multiple sequence alignment