Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACJD0W_RS00775 Genome accession   NZ_CP174456
Coordinates   158576..159298 (-) Length   240 a.a.
NCBI ID   WP_038883398.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain BD182406     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 153576..164298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJD0W_RS00750 - 154758..155249 (+) 492 WP_252041442.1 type II secretion system protein M -
  ACJD0W_RS00755 - 155251..156012 (+) 762 WP_407832628.1 type II secretion system protein N -
  ACJD0W_RS00760 cysQ 156302..157129 (-) 828 WP_045386207.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACJD0W_RS00765 nudE 157173..157742 (-) 570 WP_088881469.1 ADP compounds hydrolase NudE -
  ACJD0W_RS00770 nfuA 157894..158478 (-) 585 WP_010445007.1 Fe-S biogenesis protein NfuA -
  ACJD0W_RS00775 comF 158576..159298 (-) 723 WP_038883398.1 amidophosphoribosyltransferase Machinery gene
  ACJD0W_RS00780 bioH 159378..160148 (+) 771 WP_038883400.1 pimeloyl-ACP methyl ester esterase BioH -
  ACJD0W_RS00785 - 160276..160740 (+) 465 WP_038883402.1 hypothetical protein -
  ACJD0W_RS00790 - 160828..163146 (-) 2319 WP_407832629.1 Tex family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27651.99 Da        Isoelectric Point: 8.6246

>NTDB_id=1077105 ACJD0W_RS00775 WP_038883398.1 158576..159298(-) (comF) [Vibrio rotiferianus strain BD182406]
MLSHHWQNIMFRLLGSQCALCQFPLESGQPSILRWCSSCTELLQPQPRCLRCGLQLHSTDSEQVLVCGACLADPPPWQKL
YTLGDYSFPLAGEIQRFKDRRELWQVSGLCHQLAEQISDPAPLLTSVPIHWKRYLTRGFNQSAILTRYLAQNLSQAHDTQ
LFSKVRYTRSQRHYRKQLRKENLAHAFKLNRIPEQKHIAIVDDVVTTGSTVRQLCQLLLEVGVERIDIYCICRTPVPNTI

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1077105 ACJD0W_RS00775 WP_038883398.1 158576..159298(-) (comF) [Vibrio rotiferianus strain BD182406]
ATGTTATCTCATCACTGGCAAAACATCATGTTTCGCCTTCTCGGTAGCCAATGTGCACTTTGCCAGTTCCCGCTCGAAAG
TGGGCAACCTTCCATTCTGCGTTGGTGTTCCAGCTGTACTGAACTACTACAACCTCAGCCAAGGTGTTTGCGCTGCGGAC
TCCAACTTCACTCTACAGATTCAGAGCAGGTATTAGTCTGCGGCGCTTGTTTAGCGGATCCACCACCCTGGCAAAAACTC
TACACCTTAGGTGATTACAGCTTCCCATTGGCTGGGGAAATTCAGCGATTTAAAGATCGCCGTGAATTATGGCAAGTGTC
GGGGCTTTGCCATCAACTTGCAGAGCAAATCTCGGACCCTGCCCCACTATTGACAAGCGTCCCCATTCATTGGAAACGCT
ACCTCACCAGGGGCTTCAATCAAAGTGCAATCTTAACGCGCTACCTTGCACAAAACTTATCGCAAGCACACGATACTCAA
CTTTTTAGCAAAGTGCGTTATACCCGCTCTCAACGACACTACCGAAAACAGCTTAGAAAAGAGAATCTCGCTCATGCCTT
TAAGCTAAATCGAATCCCAGAACAAAAACACATCGCCATTGTTGATGATGTGGTTACCACAGGCAGTACGGTCCGACAAT
TATGTCAATTACTACTTGAAGTTGGGGTCGAAAGAATTGATATTTACTGCATCTGCCGAACTCCTGTTCCAAATACGATC
TAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(181-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

56.017

100

0.563
  comF Vibrio cholerae strain A1552

49.367

98.75

0.487

Multiple sequence alignment