Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACIU4M_RS17740 Genome accession   NZ_CP174375
Coordinates   3414400..3415179 (+) Length   259 a.a.
NCBI ID   WP_058337353.1    Uniprot ID   -
Organism   Bacillus altitudinis strain SF5     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3409400..3420179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIU4M_RS17720 (ACIU4M_17720) trmFO 3410104..3411408 (+) 1305 WP_072367268.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACIU4M_RS17725 (ACIU4M_17725) xerC 3411471..3412388 (+) 918 WP_007499616.1 tyrosine recombinase XerC -
  ACIU4M_RS17730 (ACIU4M_17730) hslV 3412403..3412948 (+) 546 WP_007499614.1 ATP-dependent protease subunit HslV -
  ACIU4M_RS17735 (ACIU4M_17735) hslU 3412965..3414365 (+) 1401 WP_008344818.1 HslU--HslV peptidase ATPase subunit -
  ACIU4M_RS17740 (ACIU4M_17740) codY 3414400..3415179 (+) 780 WP_058337353.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACIU4M_RS17745 (ACIU4M_17745) flgB 3415469..3415858 (+) 390 WP_017359092.1 flagellar basal body rod protein FlgB -
  ACIU4M_RS17750 (ACIU4M_17750) flgC 3415858..3416310 (+) 453 WP_007499610.1 flagellar basal body rod protein FlgC -
  ACIU4M_RS17755 (ACIU4M_17755) fliE 3416322..3416639 (+) 318 WP_007499609.1 flagellar hook-basal body complex protein FliE -
  ACIU4M_RS17760 (ACIU4M_17760) fliF 3416690..3418282 (+) 1593 WP_017359091.1 flagellar basal-body MS-ring/collar protein FliF -
  ACIU4M_RS17765 (ACIU4M_17765) fliG 3418294..3419310 (+) 1017 WP_034281776.1 flagellar motor switch protein FliG -
  ACIU4M_RS17770 (ACIU4M_17770) fliH 3419303..3420067 (+) 765 WP_024720351.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29016.26 Da        Isoelectric Point: 4.6467

>NTDB_id=1077004 ACIU4M_RS17740 WP_058337353.1 3414400..3415179(+) (codY) [Bacillus altitudinis strain SF5]
MALLQKTRIINSMLQDAAGKPVNFKEMAETLRDVIDSNIFVLSRRGKLLGYSINQQIENPRMKKMLEDRQFPEEYTKSLF
NIPETSSNLDINSEYTAFPIENRDLFQSGLTTIVPIIGGGDRLGTLILSRLQDTFTDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1077004 ACIU4M_RS17740 WP_058337353.1 3414400..3415179(+) (codY) [Bacillus altitudinis strain SF5]
ATGGCGTTACTACAAAAAACAAGGATTATTAACTCGATGCTGCAAGATGCAGCGGGGAAGCCGGTTAATTTCAAAGAAAT
GGCAGAAACATTGAGAGATGTCATTGATTCAAACATTTTCGTATTAAGCAGAAGAGGGAAGCTTCTTGGCTATTCGATCA
ACCAACAGATTGAAAATCCGCGTATGAAGAAAATGCTTGAAGACCGTCAGTTCCCTGAAGAATATACAAAGAGTCTATTC
AACATCCCTGAAACATCTTCAAATCTTGACATCAACAGTGAGTATACAGCTTTCCCGATTGAGAACCGTGATTTATTCCA
ATCAGGTTTGACAACGATTGTACCAATCATCGGAGGCGGAGATCGCTTAGGGACGTTAATCCTTTCTCGTTTGCAAGATA
CATTCACAGATGATGATTTAATTCTTGCTGAATACGGCGCAACAGTTGTAGGGATGGAGATTCTTCGCGAGAAAGCGGAA
GAAATTGAAGAAGAAGCAAGAAGTAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTTTCATATAGTGAGCTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGATGGAAACGAAGGGCTGCTTGTGGCAAGTAAGATTGCTGACCGTGTAGGAATCACTC
GTTCAGTGATCGTAAACGCACTTCGTAAATTAGAAAGTGCAGGCGTTATTGAATCTCGTTCTCTTGGAATGAAGGGAACA
TACATCAAAGTATTAAACAACAAATTTTTAATTGAACTTGAAAATTTAAAATCTCACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

96.139

100

0.961
  codY Lactococcus lactis subsp. lactis strain DGCC12653

48.425

98.069

0.475

Multiple sequence alignment