Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACJA3J_RS14675 Genome accession   NZ_CP174345
Coordinates   2857511..2859835 (-) Length   774 a.a.
NCBI ID   WP_406944444.1    Uniprot ID   -
Organism   Halobacillus sp. SY10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2852511..2864835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJA3J_RS14660 (ACJA3J_14660) - 2855382..2856449 (-) 1068 WP_089652617.1 AI-2E family transporter -
  ACJA3J_RS14665 (ACJA3J_14665) - 2856456..2856632 (-) 177 WP_089652618.1 hypothetical protein -
  ACJA3J_RS14670 (ACJA3J_14670) - 2856687..2857499 (-) 813 WP_406944443.1 TIM barrel protein -
  ACJA3J_RS14675 (ACJA3J_14675) recD2 2857511..2859835 (-) 2325 WP_406944444.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACJA3J_RS14680 (ACJA3J_14680) - 2859851..2860510 (-) 660 WP_089652621.1 lipopolysaccharide assembly protein LapB -
  ACJA3J_RS14685 (ACJA3J_14685) mnmA 2860718..2861830 (-) 1113 WP_406944445.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACJA3J_RS14690 (ACJA3J_14690) - 2861849..2862988 (-) 1140 WP_406944446.1 cysteine desulfurase family protein -
  ACJA3J_RS14695 (ACJA3J_14695) cymR 2863006..2863425 (-) 420 WP_089652624.1 cysteine metabolism transcriptional regulator CymR -
  ACJA3J_RS14700 (ACJA3J_14700) - 2863379..2864062 (-) 684 WP_089652625.1 YitT family protein -

Sequence

Protein


Download         Length: 774 a.a.        Molecular weight: 88285.92 Da        Isoelectric Point: 4.8057

>NTDB_id=1076780 ACJA3J_RS14675 WP_406944444.1 2857511..2859835(-) (recD2) [Halobacillus sp. SY10]
MTQQSLFQESNEERPYVKGELSRMIFHNESEHFSIASIHVKETNEAFEEKSLVIKGHFSPLEEGETYMFYGEFKNHKKFG
LQYEVDMYNRVLPETKDGIVLYLSSDLFHGIGKKTAERIVDELGEQAISRILENRDVLDAVPKLPKDKADQLYEALKEHQ
GFEHVMIHLSQYGFGLKLAQKIYEAFKDQTMAIIEEDPYQLVFHVDGFGFHRADEMAKMQNLSHDHPTRIRAACLYMMQK
SMSAGHVYLPTEECLVQVEQLLNQGSEPAITFEQLSEQMIHLGEERFVYIEEERIYLPTLYFAENGFCSHVDRIQEKEVD
VAHTQADLMKIIGDLEEEEAMSYGEDQFNAIEKALHSKLMILTGGPGTGKTTVIKGIIHTYAELNDFSIHPEDYDSDKPF
PFVLAAPTGRAAKRMTESTGLPASTIHRLLGWDGHDSFERNQNNPLEGSLLIIDEFSMVDIWLANQLFRAIPDDMQVLLV
GDEDQLPSVGPGQVLADLLASNTLPSVKLTEVYRQKEGSKIIQLAHEIKKDACTTASLEKDHDFNFIPAREHQLSDLVTN
IVQKALDKGNELKDIQVLAPMYRTDVGIHKLNESIQQTVNPKSKQKRDLRHFEVTYRKGDKVIQLVNQPEDGVYNGDIGE
IVAIFRAEENVDGVEQVVVDFEGKEVVYPKKDLNSIMHAYCTSIHKSQGSEFSIVILPIVRSYRRMLRKNLIYTAITRSK
QSLIICGDREAFLDGVGTTDTNTRYTRLKEKLQEESVPEVDTEEEEQLSPYDFM

Nucleotide


Download         Length: 2325 bp        

>NTDB_id=1076780 ACJA3J_RS14675 WP_406944444.1 2857511..2859835(-) (recD2) [Halobacillus sp. SY10]
ATGACTCAACAATCGCTCTTTCAAGAATCGAATGAAGAACGTCCTTATGTCAAAGGGGAATTGAGCCGGATGATCTTTCA
CAATGAATCCGAGCACTTTTCGATTGCTTCCATTCATGTGAAGGAAACGAATGAAGCCTTCGAAGAGAAGTCCCTTGTGA
TCAAAGGGCATTTTTCTCCTTTGGAGGAAGGCGAAACCTATATGTTTTATGGAGAATTCAAAAACCATAAAAAATTCGGG
CTGCAATATGAAGTAGACATGTACAATCGTGTGTTGCCGGAAACGAAAGATGGAATCGTCCTCTACTTGTCCAGTGATCT
TTTCCACGGCATTGGAAAAAAAACAGCCGAACGGATCGTGGATGAGTTAGGAGAACAAGCGATATCAAGAATTTTGGAAA
ACCGTGATGTGTTAGATGCTGTTCCAAAGTTGCCTAAAGATAAAGCGGATCAACTATATGAGGCCTTGAAAGAGCATCAA
GGGTTCGAACACGTCATGATTCATTTGTCTCAATATGGATTTGGTTTGAAGCTTGCTCAAAAAATCTATGAAGCCTTTAA
GGATCAAACGATGGCGATCATTGAAGAAGATCCTTACCAGCTCGTCTTCCACGTGGATGGCTTCGGTTTTCATCGAGCGG
ATGAAATGGCAAAGATGCAGAATCTTTCCCATGATCATCCAACAAGGATTCGAGCGGCGTGCTTGTATATGATGCAAAAA
AGCATGAGTGCGGGACATGTCTATCTCCCGACAGAAGAGTGCCTCGTCCAGGTTGAACAACTGTTAAATCAGGGCTCAGA
GCCTGCCATTACTTTCGAACAGCTATCTGAGCAAATGATCCATCTTGGTGAAGAACGTTTTGTATATATTGAAGAGGAAC
GCATCTATCTTCCGACTCTATACTTTGCTGAAAATGGTTTTTGCAGTCATGTGGACCGCATTCAAGAAAAAGAGGTTGAT
GTAGCACACACACAAGCAGATTTGATGAAAATCATCGGGGACTTGGAAGAAGAGGAAGCGATGAGTTATGGCGAAGACCA
GTTCAACGCCATTGAAAAAGCCCTTCATTCCAAATTGATGATTTTAACCGGTGGACCGGGAACGGGTAAAACGACCGTCA
TTAAAGGAATCATCCATACGTATGCAGAATTGAACGATTTTTCTATCCATCCCGAAGATTATGATAGTGACAAACCTTTT
CCATTCGTCCTTGCAGCACCGACAGGAAGAGCTGCAAAAAGGATGACAGAATCGACAGGACTGCCTGCAAGCACCATCCA
CCGTTTGTTAGGGTGGGATGGACATGACTCCTTTGAACGCAATCAGAACAACCCGCTGGAAGGGAGTCTGTTGATCATCG
ATGAATTTTCGATGGTCGATATTTGGCTTGCAAATCAATTGTTCCGCGCCATCCCTGATGATATGCAAGTCTTACTTGTT
GGAGATGAAGACCAACTGCCTTCGGTAGGTCCCGGTCAAGTGCTTGCTGATCTCTTAGCTTCTAACACACTTCCATCCGT
AAAGTTAACAGAAGTCTATCGTCAAAAGGAAGGTTCGAAAATCATCCAGCTTGCCCATGAGATAAAGAAGGATGCTTGTA
CGACAGCCTCCCTTGAAAAGGACCATGACTTCAACTTCATCCCGGCAAGAGAACACCAGTTAAGTGATCTCGTGACTAAC
ATTGTCCAAAAAGCGTTGGACAAGGGGAATGAATTGAAAGACATTCAAGTACTTGCTCCGATGTATCGAACAGACGTAGG
GATCCATAAGTTGAATGAAAGCATCCAGCAAACGGTTAATCCGAAAAGTAAACAAAAACGCGATTTAAGGCACTTTGAGG
TTACTTATCGAAAAGGGGATAAGGTCATCCAATTGGTGAATCAGCCTGAAGATGGTGTTTATAATGGAGATATCGGCGAA
ATCGTAGCCATTTTCCGTGCGGAAGAAAACGTGGATGGCGTTGAGCAGGTGGTAGTCGATTTTGAAGGAAAAGAAGTCGT
CTATCCGAAAAAAGACTTGAACAGCATCATGCATGCCTATTGTACCTCCATTCATAAATCCCAGGGCAGTGAATTTTCCA
TAGTTATACTGCCAATCGTGAGAAGCTATCGCCGAATGTTAAGAAAGAATCTAATCTATACGGCCATTACAAGATCCAAA
CAGTCTCTCATTATTTGCGGTGACCGGGAAGCTTTCCTTGACGGTGTGGGTACAACAGATACGAATACAAGATACACAAG
GTTAAAAGAGAAACTGCAAGAAGAATCCGTACCTGAAGTGGATACAGAAGAAGAAGAACAGTTGTCACCATATGATTTTA
TGTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(678-726)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(591-661)

AAA domain (AAA_30)

(343-537)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.362

100

0.5

Multiple sequence alignment