Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ACJEHO_RS04355 Genome accession   NZ_CP174241
Coordinates   982236..982784 (-) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF584     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 977236..987784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHO_RS04335 (ACJEHO_04335) aroK 977969..978496 (-) 528 WP_010946667.1 shikimate kinase AroK -
  ACJEHO_RS04340 (ACJEHO_04340) pilQ 978942..981038 (-) 2097 WP_110539734.1 type IV pilus secretin PilQ Machinery gene
  ACJEHO_RS04345 (ACJEHO_04345) pilP 981042..981626 (-) 585 WP_027266404.1 pilus assembly protein PilP Machinery gene
  ACJEHO_RS04350 (ACJEHO_04350) pilO 981623..982222 (-) 600 WP_011215096.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJEHO_RS04355 (ACJEHO_04355) pilN 982236..982784 (-) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  ACJEHO_RS04360 (ACJEHO_04360) pilM 982788..983852 (-) 1065 WP_011215094.1 type IV pilus assembly protein PilM Machinery gene
  ACJEHO_RS04365 (ACJEHO_04365) ravI 984269..985276 (+) 1008 WP_011215093.1 Dot/Icm T4SS effector RavI -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=1076344 ACJEHO_RS04355 WP_010946663.1 982236..982784(-) (pilN) [Legionella pneumophila strain SPF584]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1076344 ACJEHO_RS04355 WP_010946663.1 982236..982784(-) (pilN) [Legionella pneumophila strain SPF584]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGGATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTCTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995

Multiple sequence alignment