Detailed information NTG0107594

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AABJ90_RS12065
• Genome accession: NZ_AP028964
• Coordinates: 2367463..2368242 (-)
• Length: 259 a.a.
• NCBI ID: WP_003220850.1
• Uniprot ID: G4NSM6
• Organism: Bacillus subtilis strain NA05 = NBRC 116153
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 2362463..2373242

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABJ90_RS12035 (BsubNA05_23290)	fliH	2362481..2363233 (-)	753	WP_003244804.1	flagellar assembly protein FliH	-
AABJ90_RS12040 (BsubNA05_23300)	fliG	2363226..2364242 (-)	1017	WP_003231981.1	flagellar motor switch protein FliG	-
AABJ90_RS12045 (BsubNA05_23310)	fliF	2364255..2365865 (-)	1611	WP_163189421.1	flagellar basal-body MS-ring/collar protein FliF	-
AABJ90_RS12050 (BsubNA05_23320)	fliE	2365911..2366231 (-)	321	WP_003238544.1	flagellar hook-basal body complex protein FliE	-
AABJ90_RS12055 (BsubNA05_23330)	flgC	2366242..2366694 (-)	453	WP_003245521.1	flagellar basal body rod protein FlgC	-
AABJ90_RS12060 (BsubNA05_23340)	flgB	2366694..2367083 (-)	390	WP_338381990.1	flagellar basal body rod protein FlgB	-
AABJ90_RS12065 (BsubNA05_23350)	codY	2367463..2368242 (-)	780	WP_003220850.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AABJ90_RS12070 (BsubNA05_23360)	hslU	2368282..2369694 (-)	1413	WP_256683486.1	HslU--HslV peptidase ATPase subunit	-
AABJ90_RS12075 (BsubNA05_23370)	clpQ	2369702..2370247 (-)	546	WP_003238555.1	ATP-dependent protease subunit ClpQ	-
AABJ90_RS12080 (BsubNA05_23380)	xerC	2370260..2371174 (-)	915	WP_003231988.1	tyrosine recombinase XerC	-
AABJ90_RS12085 (BsubNA05_23390)	trmFO	2371242..2372549 (-)	1308	WP_003244725.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29013.22 Da
• Isoelectric Point: 4.6514

>NTDB_id=107594 AABJ90_RS12065 WP_003220850.1 2367463..2368242(-) (codY) [Bacillus subtilis strain NA05 = NBRC 116153]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=107594 AABJ90_RS12065 WP_003220850.1 2367463..2368242(-) (codY) [Bacillus subtilis strain NA05 = NBRC 116153]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: G4NSM6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	100	100	1
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467