Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   ACJEHX_RS04620 Genome accession   NZ_CP174220
Coordinates   1016957..1017544 (+) Length   195 a.a.
NCBI ID   WP_010946665.1    Uniprot ID   Q5ZX03
Organism   Legionella pneumophila strain SPF647     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1011957..1022544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEHX_RS04600 (ACJEHX_04600) ravI 1013304..1014314 (-) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -
  ACJEHX_RS04605 (ACJEHX_04605) pilM 1014731..1015795 (+) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  ACJEHX_RS04610 (ACJEHX_04610) pilN 1015799..1016347 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  ACJEHX_RS04615 (ACJEHX_04615) pilO 1016361..1016960 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJEHX_RS04620 (ACJEHX_04620) pilP 1016957..1017544 (+) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  ACJEHX_RS04625 (ACJEHX_04625) pilQ 1017548..1019644 (+) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  ACJEHX_RS04630 (ACJEHX_04630) aroK 1020090..1020617 (+) 528 WP_010946667.1 shikimate kinase AroK -
  ACJEHX_RS04635 (ACJEHX_04635) aroB 1020604..1021713 (+) 1110 WP_010946668.1 3-dehydroquinate synthase -

Sequence


Protein


Download         Length: 195 a.a.        Molecular weight: 22343.91 Da        Isoelectric Point: 10.3617

>NTDB_id=1075454 ACJEHX_RS04620 WP_010946665.1 1016957..1017544(+) (pilP) [Legionella pneumophila strain SPF647]
MIIKNNQTLLILGFFGNSLRTLLTSENFRKSLFTALLVLLLSACSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRF
PENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRI
ILIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=1075454 ACJEHX_RS04620 WP_010946665.1 1016957..1017544(+) (pilP) [Legionella pneumophila strain SPF647]
ATGATAATTAAAAATAACCAGACTCTTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGCACTTTACTCACCTCAGAGAA
TTTCCGAAAAAGCCTATTCACAGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTGTTAAGT
ACATCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTT
CCAGAAAACGACAATAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAA
AAGGCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCT
GGGCTCTGATTAAACAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATT
ATTTTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAAT
TAATTTGGATACTGGCAAGCAGGAGTGA

Domains


Predicted by InterproScan.

(50-189)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5ZX03

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

96.923

100

0.969


Multiple sequence alignment