Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilN   Type   Machinery gene
Locus tag   ACJEH4_RS04605 Genome accession   NZ_CP174212
Coordinates   1015799..1016347 (+) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila strain SPF658     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1010799..1021347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJEH4_RS04595 (ACJEH4_04595) ravI 1013304..1014314 (-) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -
  ACJEH4_RS04600 (ACJEH4_04600) pilM 1014731..1015795 (+) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  ACJEH4_RS04605 (ACJEH4_04605) pilN 1015799..1016347 (+) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  ACJEH4_RS04610 (ACJEH4_04610) pilO 1016361..1016960 (+) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  ACJEH4_RS04615 (ACJEH4_04615) pilP 1016957..1017544 (+) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  ACJEH4_RS04620 (ACJEH4_04620) pilQ 1017548..1019644 (+) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  ACJEH4_RS04625 (ACJEH4_04625) aroK 1020090..1020617 (+) 528 WP_010946667.1 shikimate kinase AroK -

Sequence


Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=1075118 ACJEH4_RS04605 WP_010946663.1 1015799..1016347(+) (pilN) [Legionella pneumophila strain SPF658]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=1075118 ACJEH4_RS04605 WP_010946663.1 1015799..1016347(+) (pilN) [Legionella pneumophila strain SPF658]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGAATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTTTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains


Predicted by InterproScan.

(100-176)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995


Multiple sequence alignment