Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACJA24_RS08210 Genome accession   NZ_CP174198
Coordinates   1617227..1618006 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain LQ-03     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1612227..1623006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJA24_RS08190 trmFO 1612914..1614221 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACJA24_RS08195 xerC 1614291..1615208 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACJA24_RS08200 hslV 1615224..1615769 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ACJA24_RS08205 hslU 1615786..1617189 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  ACJA24_RS08210 codY 1617227..1618006 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACJA24_RS08215 flgB 1618360..1618749 (+) 390 WP_095318220.1 flagellar basal body rod protein FlgB -
  ACJA24_RS08220 flgC 1618749..1619201 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  ACJA24_RS08225 fliE 1619212..1619532 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACJA24_RS08230 fliF 1619575..1621185 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  ACJA24_RS08235 fliG 1621198..1622214 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACJA24_RS08240 fliH 1622207..1622962 (+) 756 WP_032856803.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1074910 ACJA24_RS08210 WP_003154263.1 1617227..1618006(+) (codY) [Bacillus velezensis strain LQ-03]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1074910 ACJA24_RS08210 WP_003154263.1 1617227..1618006(+) (codY) [Bacillus velezensis strain LQ-03]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGCTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment