Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACCO34_RS08480 Genome accession   NZ_CP174160
Coordinates   1647276..1648055 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SMT-24     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642276..1653055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO34_RS08460 trmFO 1642963..1644270 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACCO34_RS08465 xerC 1644340..1645257 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  ACCO34_RS08470 hslV 1645273..1645818 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  ACCO34_RS08475 hslU 1645835..1647238 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  ACCO34_RS08480 codY 1647276..1648055 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACCO34_RS08485 flgB 1648409..1648798 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  ACCO34_RS08490 flgC 1648798..1649250 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  ACCO34_RS08495 fliE 1649261..1649581 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  ACCO34_RS08500 fliF 1649624..1651234 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  ACCO34_RS08505 fliG 1651247..1652263 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  ACCO34_RS08510 fliH 1652256..1653011 (+) 756 WP_015388237.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=1074750 ACCO34_RS08480 WP_003154263.1 1647276..1648055(+) (codY) [Bacillus velezensis strain SMT-24]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1074750 ACCO34_RS08480 WP_003154263.1 1647276..1648055(+) (codY) [Bacillus velezensis strain SMT-24]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment