Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACCH06_RS08945 Genome accession   NZ_CP174157
Coordinates   1773018..1773797 (+) Length   259 a.a.
NCBI ID   WP_003328951.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1768018..1778797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS08925 trmFO 1768713..1770020 (+) 1308 WP_258729206.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACCH06_RS08930 xerC 1770087..1771001 (+) 915 WP_258729207.1 tyrosine recombinase XerC -
  ACCH06_RS08935 clpQ 1771015..1771560 (+) 546 WP_258729208.1 ATP-dependent protease subunit ClpQ -
  ACCH06_RS08940 hslU 1771568..1772980 (+) 1413 WP_255265367.1 HslU--HslV peptidase ATPase subunit -
  ACCH06_RS08945 codY 1773018..1773797 (+) 780 WP_003328951.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACCH06_RS08950 flgB 1774218..1774607 (+) 390 WP_010788604.1 flagellar basal body rod protein FlgB -
  ACCH06_RS08955 flgC 1774607..1775056 (+) 450 WP_061670771.1 flagellar basal body rod protein FlgC -
  ACCH06_RS08960 fliE 1775067..1775387 (+) 321 WP_003328948.1 flagellar hook-basal body complex protein FliE -
  ACCH06_RS08965 fliF 1775431..1777038 (+) 1608 WP_088117155.1 flagellar basal-body MS-ring/collar protein FliF -
  ACCH06_RS08970 fliG 1777051..1778067 (+) 1017 WP_003328945.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29042.26 Da        Isoelectric Point: 4.6017

>NTDB_id=1074671 ACCH06_RS08945 WP_003328951.1 1773018..1773797(+) (codY) [Bacillus atrophaeus strain SHZ-24]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1074671 ACCH06_RS08945 WP_003328951.1 1773018..1773797(+) (codY) [Bacillus atrophaeus strain SHZ-24]
ATGGCTTTATTACAAAAAACAAGAATTATTAATTCCATGCTTCAAGCTGCGGCAGGGAAACCGGTAAACTTTAAAGAAAT
GGCGGAAACACTTCGGGATGTTATTGATTCAAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTGTTAGGCTATTCTATTA
ATCAGCAAATCGAGAACGACCGTATGAAAAAAATGCTTGAAGACCGTCAGTTCCCGGAAGAATACACAAAAAACCTATTT
AATATTCCGGAGACTTCTTCTAATCTGGATATTAACAGTGAGTACACAGCGTTTCCGGTCGAAAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTACCTATTATCGGAGGCGGAGAAAGACTTGGAACGCTTATTCTTTCACGCTTGCAGGATC
AATTTGAGGACGATGATCTAATTCTTGCTGAATACGGGGCGACCGTTGTAGGAATGGAAATCCTCAGAGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGCAGCAAAGCTGTAGTTCAAATGGCGATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCGAT
TGAGCACATCTTTGAAGAACTTGACGGAAACGAAGGCCTGCTTGTGGCGAGTAAAATTGCAGACCGCGTCGGCATTACCC
GTTCCGTGATTGTCAATGCACTCAGAAAGCTTGAAAGTGCCGGTGTCATCGAATCGAGATCACTCGGAATGAAGGGCACT
TATATTAAAGTCCTTAATAACAAGTTCTTGATCGAATTAGAAAACCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment