Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACCH06_RS08915 Genome accession   NZ_CP174157
Coordinates   1765474..1766373 (+) Length   299 a.a.
NCBI ID   WP_258729204.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SHZ-24     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1760474..1771373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCH06_RS08895 - 1761124..1762872 (+) 1749 WP_258729203.1 hypothetical protein -
  ACCH06_RS08900 - 1762869..1763150 (+) 282 WP_010788597.1 FlhB-like flagellar biosynthesis protein -
  ACCH06_RS08905 sucC 1763324..1764481 (+) 1158 WP_010788598.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCH06_RS08910 sucD 1764510..1765412 (+) 903 WP_003328958.1 succinate--CoA ligase subunit alpha -
  ACCH06_RS08915 dprA 1765474..1766373 (+) 900 WP_258729204.1 DNA-processing protein DprA Machinery gene
  ACCH06_RS08920 topA 1766562..1768637 (+) 2076 WP_258729205.1 type I DNA topoisomerase -
  ACCH06_RS08925 trmFO 1768713..1770020 (+) 1308 WP_258729206.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACCH06_RS08930 xerC 1770087..1771001 (+) 915 WP_258729207.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33231.28 Da        Isoelectric Point: 9.5696

>NTDB_id=1074670 ACCH06_RS08915 WP_258729204.1 1765474..1766373(+) (dprA) [Bacillus atrophaeus strain SHZ-24]
MDQASACLLICSINRLLSPSLLLKWWKADPSLSFKTDPHPIHTITSGKIKAAALKTQIEKEYDKLQEQLSDYQRRGIKVI
PITSHQYPTWLKTIYDPPPVLFAKGNENLLIKGRKIGVVGTRNPTAYGKKAVFHLTKELAGNQWIIVSGLAAGIDGLSHR
ACIRARGYTIGVIAGGFHHIYPRENQQLAEYMAKYHLLLSEHPPETKPQKWHFPMRNRLISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFDPYSGGPIKLIQEGAKSVQSAEDIYSELSEGNVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=1074670 ACCH06_RS08915 WP_258729204.1 1765474..1766373(+) (dprA) [Bacillus atrophaeus strain SHZ-24]
TTGGATCAGGCGTCTGCCTGTTTACTCATTTGCAGCATTAACCGTTTATTATCCCCGTCTCTTCTATTAAAATGGTGGAA
GGCTGATCCGTCTCTTTCTTTTAAGACTGATCCGCACCCAATACACACCATCACTTCCGGTAAAATAAAAGCCGCCGCGC
TTAAAACTCAAATAGAGAAAGAATATGATAAGCTTCAAGAACAGCTGTCTGACTATCAACGGCGAGGTATCAAAGTCATT
CCGATCACTTCACATCAATATCCGACATGGCTGAAAACGATCTATGATCCGCCTCCCGTTTTGTTTGCCAAAGGGAATGA
GAACCTGCTTATAAAAGGCCGGAAAATTGGAGTGGTAGGTACGCGAAATCCTACCGCATATGGCAAAAAAGCAGTTTTTC
ATCTAACAAAAGAGCTTGCAGGCAACCAGTGGATCATTGTCAGCGGACTCGCGGCCGGAATAGACGGTTTGTCCCATAGA
GCCTGCATCAGGGCAAGAGGGTATACAATCGGTGTCATAGCAGGCGGTTTTCATCATATATATCCCCGAGAAAATCAGCA
GTTAGCAGAATACATGGCGAAGTATCATCTGCTGCTGTCAGAACATCCACCGGAAACAAAACCCCAAAAATGGCATTTTC
CCATGAGAAACCGTTTAATAAGCGGGTTGTCCGAAGGCATAGTGGTAGTGCAAGGCAAAGAAAAAAGCGGTTCGTTAATC
ACTGCCTATCAAGCGCTTGACCAGGGCAGGGAGGTGTTTGCCGTGCCTGGTTCTATATTTGATCCATACTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCAAAATCTGTACAGTCCGCTGAGGATATTTACAGTGAGTTATCGGAGGGAAACGTTC
AATATACGGAACCCTTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

73.913

100

0.739

Multiple sequence alignment