Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACJED3_RS02885 Genome accession   NZ_CP174155
Coordinates   511248..512027 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain G01     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 506248..517027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJED3_RS02855 fliH 506279..507031 (-) 753 WP_014479782.1 flagellar assembly protein FliH -
  ACJED3_RS02860 fliG 507024..508040 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ACJED3_RS02865 fliF 508053..509650 (-) 1598 Protein_569 flagellar basal-body MS-ring/collar protein FliF -
  ACJED3_RS02870 fliE 509696..510016 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ACJED3_RS02875 flgC 510027..510479 (-) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  ACJED3_RS02880 flgB 510479..510868 (-) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  ACJED3_RS02885 codY 511248..512027 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACJED3_RS02890 hslU 512067..513470 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  ACJED3_RS02895 clpQ 513487..514032 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ACJED3_RS02900 xerC 514045..514959 (-) 915 WP_014479777.1 tyrosine recombinase XerC -
  ACJED3_RS02905 trmFO 515027..516334 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1074562 ACJED3_RS02885 WP_003220850.1 511248..512027(-) (codY) [Bacillus subtilis strain G01]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1074562 ACJED3_RS02885 WP_003220850.1 511248..512027(-) (codY) [Bacillus subtilis strain G01]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment