Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ACI7YX_RS08315 Genome accession   NZ_CP174103
Coordinates   1644875..1645585 (+) Length   236 a.a.
NCBI ID   WP_406542626.1    Uniprot ID   -
Organism   Clostridium ljungdahlii isolate delaor1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639875..1650585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI7YX_RS08295 (ACI7YX_08315) - 1640571..1641032 (+) 462 WP_406542371.1 hypothetical protein -
  ACI7YX_RS08300 (ACI7YX_08320) - 1641314..1643212 (+) 1899 WP_406542372.1 AAA family ATPase -
  ACI7YX_RS08305 (ACI7YX_08325) - 1643356..1643798 (+) 443 Protein_1612 MarR family winged helix-turn-helix transcriptional regulator -
  ACI7YX_RS08310 (ACI7YX_08330) - 1643952..1644637 (+) 686 Protein_1613 ABC transporter permease -
  ACI7YX_RS08315 (ACI7YX_08335) rcrP 1644875..1645585 (+) 711 WP_406542626.1 ABC transporter ATP-binding protein Regulator
  ACI7YX_RS08320 (ACI7YX_08340) - 1645572..1647494 (+) 1923 WP_029170170.1 ABC transporter ATP-binding protein -
  ACI7YX_RS08325 (ACI7YX_08345) - 1648062..1648535 (+) 474 WP_406542373.1 DUF6323 family protein -
  ACI7YX_RS08330 (ACI7YX_08350) - 1648651..1649844 (+) 1194 WP_406542374.1 DUF6179 domain-containing protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25968.31 Da        Isoelectric Point: 4.5982

>NTDB_id=1074362 ACI7YX_RS08315 WP_406542626.1 1644875..1645585(+) (rcrP) [Clostridium ljungdahlii isolate delaor1]
MDNLVLENVSLKINSGETIGIIGGTGSGKSTLVQLIPRLYDTTCGTVEVGGVDVRKYDIETLRDEVSMVLQKNVLFSGTI
KQNLRWGNKNASDKEIVAACREAQADEFIEKFPDKYDTFIEEGGSNVSGGQKQRLCIARALLKKPKILILDDSTSAVDTK
TDALIRKAFVEEIPDTTKIIIAQRISSVQDADRIIVLNDGKIDGFGTHEELLKTNDIYHEVYESQVKGDDDDNGSK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=1074362 ACI7YX_RS08315 WP_406542626.1 1644875..1645585(+) (rcrP) [Clostridium ljungdahlii isolate delaor1]
ATGGACAATCTAGTTTTGGAAAATGTAAGCTTGAAGATTAATTCTGGTGAAACCATAGGTATTATAGGAGGAACAGGAAG
TGGAAAATCTACTTTAGTTCAACTTATTCCAAGACTATATGACACTACATGTGGAACTGTTGAAGTTGGCGGAGTTGATG
TTAGAAAATATGATATAGAGACTCTTAGGGATGAAGTTTCAATGGTGCTGCAAAAGAACGTATTGTTTTCTGGGACAATA
AAGCAAAATTTAAGATGGGGAAATAAGAATGCTTCTGATAAAGAAATAGTTGCTGCGTGTAGAGAGGCTCAAGCTGATGA
ATTTATAGAAAAGTTTCCTGATAAGTATGATACTTTTATTGAAGAGGGTGGTTCAAATGTATCAGGCGGTCAAAAACAAA
GATTATGTATTGCAAGGGCTCTGCTAAAAAAACCAAAAATATTGATTTTAGATGATTCTACTAGTGCAGTGGATACTAAA
ACTGATGCTCTTATTAGGAAAGCATTTGTAGAGGAAATACCAGATACTACAAAAATTATTATTGCACAGCGTATATCTTC
AGTTCAGGATGCAGATAGAATTATTGTATTAAACGATGGAAAAATAGATGGCTTTGGAACTCATGAGGAGTTACTAAAGA
CAAATGATATATATCATGAAGTTTATGAATCTCAAGTGAAAGGAGACGACGATGACAATGGCTCAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(6-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

48.927

98.729

0.483
  rcrQ Streptococcus mutans UA159

38.393

94.915

0.364

Multiple sequence alignment