Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACI3DL_RS09900 Genome accession   NZ_CP173694
Coordinates   2033950..2035794 (-) Length   614 a.a.
NCBI ID   WP_024733259.1    Uniprot ID   A0A3E3K037
Organism   Sellimonas intestinalis strain JCM 30749(T)     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2028950..2040794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3DL_RS09890 (ACI3DL_09890) ftsH 2029962..2032013 (-) 2052 WP_024733257.1 ATP-dependent zinc metalloprotease FtsH -
  ACI3DL_RS09895 (ACI3DL_09895) - 2032362..2033837 (+) 1476 WP_024733258.1 DUF1846 domain-containing protein -
  ACI3DL_RS09900 (ACI3DL_09900) rcrQ 2033950..2035794 (-) 1845 WP_024733259.1 ABC transporter ATP-binding protein Regulator
  ACI3DL_RS09905 (ACI3DL_09905) - 2035787..2038042 (-) 2256 WP_053769896.1 ABC transporter ATP-binding protein -
  ACI3DL_RS09910 (ACI3DL_09910) - 2038065..2038568 (-) 504 WP_048622201.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI3DL_RS09915 (ACI3DL_09915) - 2038849..2039409 (-) 561 WP_048622202.1 hypothetical protein -
  ACI3DL_RS09920 (ACI3DL_09920) - 2039570..2040568 (-) 999 WP_242843464.1 permease -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68358.89 Da        Isoelectric Point: 6.8348

>NTDB_id=1073703 ACI3DL_RS09900 WP_024733259.1 2033950..2035794(-) (rcrQ) [Sellimonas intestinalis strain JCM 30749(T)]
MSNQRRGPMGGHGRMGSGEKAKDFKGTLKRVLKYIGPYKFPILCVMLFAVGSTIFNIIGPKVLGKATTEIFTGLVGKVTG
GDGIDFGKIGRILITLLILYGVSSIFSFIQGFIMTGVTQKLTYRMRKDISEKINRLPMNYFDTKTHGEVLSRVTNDVDTF
SQSLNQTATQMITSVTTLIGVLVMMLSISPLMTMVALLILPISLVLISFIVKHSQKYFKNQQEYLGHVNGQVEEVYGGHS
IVKAFNKEDDVLKEFNEMNDVLYQTAWKSQFFSGMMMPIMQFVGNLGYVGVTILGGYLAIKQTIEVGDIQSFIQYVRNFT
QPIQQVAQVANMLQSMAAASERVFEFLEEEEEVQFADDPVSTEGLQGNVEFDHVKFGYNPDHIIIKDFSTKVKEGQKIAI
VGPTGAGKTTLIKLLMRFYDVNGGAILVDGHNVRDFNRGELRRMFGMVLQDTWLFNGSIRDNIRYGKLDATDEEIMEAAK
AAHAHHFIQTLPAGYDMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEIQIQKAMDNLMKGRTSFII
AHRLSTIRDADRILVLKDGDIVEQGRHEELLAKGGFYADLYNSQFENGSSKAAS

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=1073703 ACI3DL_RS09900 WP_024733259.1 2033950..2035794(-) (rcrQ) [Sellimonas intestinalis strain JCM 30749(T)]
ATGAGTAATCAAAGACGAGGACCGATGGGTGGCCACGGACGCATGGGCAGCGGTGAGAAAGCAAAAGATTTTAAAGGGAC
TCTCAAACGGGTGCTGAAATATATCGGACCATATAAGTTTCCGATTCTGTGTGTTATGCTCTTTGCTGTCGGCAGCACGA
TTTTCAATATTATCGGGCCGAAAGTGCTCGGTAAGGCGACAACGGAGATTTTTACGGGCTTGGTCGGCAAGGTGACAGGT
GGAGACGGTATTGATTTTGGCAAAATCGGCAGAATCCTGATTACTTTGCTGATCCTGTATGGTGTGAGCTCTATCTTCTC
ATTTATTCAGGGGTTTATTATGACGGGAGTTACACAGAAGCTTACGTACCGGATGAGGAAAGATATTTCAGAGAAGATCA
ACAGACTTCCAATGAATTATTTTGATACAAAGACCCATGGAGAAGTGCTCTCCCGTGTGACAAACGACGTCGATACGTTT
AGTCAGAGTCTCAACCAGACGGCGACCCAGATGATCACTTCGGTGACAACGCTGATCGGTGTACTTGTGATGATGCTAAG
TATCAGTCCGTTGATGACGATGGTGGCTCTTTTGATCCTCCCGATTTCGCTGGTTCTGATTTCTTTCATTGTGAAACATT
CTCAGAAATACTTTAAAAATCAGCAGGAATACCTGGGGCATGTCAATGGACAGGTGGAGGAAGTTTATGGCGGCCACAGT
ATTGTAAAGGCATTCAATAAGGAGGATGACGTCCTTAAAGAATTCAATGAGATGAACGATGTGCTCTATCAGACAGCTTG
GAAATCGCAGTTTTTCTCCGGAATGATGATGCCGATCATGCAGTTTGTCGGCAACCTGGGCTATGTGGGGGTGACGATCC
TTGGCGGATACCTCGCGATCAAACAGACGATCGAAGTCGGGGATATCCAGTCCTTTATCCAGTACGTTCGAAATTTCACT
CAGCCGATCCAGCAGGTGGCACAGGTAGCGAATATGTTACAGTCCATGGCAGCAGCTTCCGAGCGTGTGTTCGAGTTTTT
GGAGGAAGAGGAAGAGGTACAGTTTGCAGATGATCCAGTATCGACAGAAGGACTTCAAGGCAATGTGGAATTTGACCATG
TGAAATTCGGCTACAATCCAGATCATATCATCATCAAGGACTTCTCCACGAAAGTGAAGGAGGGACAGAAAATCGCGATT
GTCGGTCCGACCGGAGCCGGTAAGACGACACTGATTAAACTGCTGATGCGCTTTTATGATGTCAATGGAGGAGCGATCCT
TGTGGACGGACACAATGTCAGGGATTTCAACCGTGGAGAACTGCGCCGGATGTTCGGTATGGTGCTTCAGGATACGTGGC
TCTTTAACGGTTCCATCCGGGATAATATCCGGTACGGCAAGCTGGACGCTACAGATGAGGAGATCATGGAGGCAGCAAAG
GCGGCGCATGCCCATCATTTTATCCAGACACTTCCGGCTGGATATGACATGGAGCTCAATGAGGAGGCAAGCAACGTTTC
CCAGGGGCAAAAACAGCTTCTGACCATTGCAAGAGCCATTTTGGCAGATCCGAAGATCCTTATTCTGGATGAAGCGACAA
GCTCGGTTGATACAAGAACGGAGATCCAGATTCAGAAGGCAATGGATAATTTGATGAAAGGCAGAACAAGTTTCATTATT
GCCCATCGTCTTTCCACCATTCGGGATGCAGACCGGATTCTGGTTCTCAAAGACGGAGACATCGTTGAGCAGGGCAGGCA
TGAAGAACTCCTTGCAAAAGGTGGATTTTACGCTGATCTCTACAATTCACAGTTTGAAAACGGAAGCAGTAAGGCAGCTT
CCTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(43-322)

ABC transporter (ABC_tran)

(386-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E3K037

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.119

94.625

0.484

Multiple sequence alignment