Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACI3DM_RS09660 Genome accession   NZ_CP173660
Coordinates   1990588..1992411 (+) Length   607 a.a.
NCBI ID   WP_221919520.1    Uniprot ID   -
Organism   Sellimonas caecigallum strain JCM 35759     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1985588..1997411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3DM_RS09645 (ACI3DM_09645) - 1987054..1987602 (+) 549 WP_087198815.1 hypothetical protein -
  ACI3DM_RS09650 (ACI3DM_09650) - 1987817..1988311 (+) 495 WP_221919522.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACI3DM_RS09655 (ACI3DM_09655) - 1988340..1990595 (+) 2256 WP_221919521.1 ABC transporter ATP-binding protein -
  ACI3DM_RS09660 (ACI3DM_09660) rcrQ 1990588..1992411 (+) 1824 WP_221919520.1 ABC transporter ATP-binding protein Regulator
  ACI3DM_RS09665 (ACI3DM_09665) - 1992495..1993973 (-) 1479 WP_087198819.1 DUF1846 domain-containing protein -
  ACI3DM_RS09670 (ACI3DM_09670) ftsH 1994208..1996235 (+) 2028 WP_221919519.1 ATP-dependent zinc metalloprotease FtsH -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 67872.48 Da        Isoelectric Point: 6.4611

>NTDB_id=1073570 ACI3DM_RS09660 WP_221919520.1 1990588..1992411(+) (rcrQ) [Sellimonas caecigallum strain JCM 35759]
MSRHGRPMGAGEKAKDFKGTMKKLLKYIGRYKIAIVFVMIFAVGSTVFNIVGPKILGKATTEIFTGLVGKVSGGKGIDFG
KIGVILLTLMGLYVISALFSLVQGFIMTGVTQKLTYRMRKEISEKINRMPMNYFDTRTHGEVLSRITNDVDTLSQSLNQS
VTQMITSVTMLIGVLIMMLSISPLMTLVALLILPLSVFLISIIVKHSQRYFRNQQEYLGHVNGQVEEVYSGHNIVKVFNK
EEDVLKEFNKMNDTLYQSAWKSQFFSGMMMPIMQFVGNLGYVGVTILGGYLAIKQTIEVGDIQSFIQYVRSFTQPIQQVA
QVANMLQATAAASERVFEFLEEEEEEQFAEHPVSVEGLKGNVEFRHVKFGYHPDNIIIKDFSTNVTEGQKIAIVGPTGAG
KTTLIKLLMRFYDVNEGEILVDGHNVKDFNRSELRHMFGMVLQDTWLFNGSIRDNIRYGKLDATDEEIIEAAKAAHAHHF
IQTLPSGYDMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMKGRTSFIIAHRLSTI
RDADQILVLKDGDIVEQGKHEELLEKGGFYADLYNSQFDDGSGEMAS

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=1073570 ACI3DM_RS09660 WP_221919520.1 1990588..1992411(+) (rcrQ) [Sellimonas caecigallum strain JCM 35759]
ATGAGTAGACATGGAAGACCTATGGGGGCTGGAGAGAAGGCCAAAGACTTTAAAGGGACAATGAAAAAACTCTTGAAGTA
TATCGGCAGATACAAGATTGCTATAGTATTTGTCATGATTTTTGCTGTCGGAAGTACAGTATTTAATATCGTAGGGCCAA
AGATCCTTGGAAAAGCGACAACGGAAATCTTTACCGGACTTGTAGGAAAGGTATCTGGAGGAAAGGGAATTGATTTCGGT
AAGATTGGGGTAATTCTTCTTACTTTAATGGGACTTTATGTAATCAGCGCCCTGTTCTCCCTTGTACAGGGATTTATTAT
GACAGGAGTCACGCAGAAACTGACTTACCGTATGCGCAAAGAAATCTCAGAAAAGATCAACCGTATGCCGATGAATTATT
TTGACACGAGGACACATGGGGAAGTGCTTTCCAGGATAACGAACGATGTGGATACGCTAAGTCAGAGTCTGAATCAAAGT
GTGACCCAGATGATTACCTCTGTCACGATGCTTATCGGAGTGCTCATCATGATGCTGAGTATCAGTCCGCTCATGACGCT
TGTGGCGCTTTTGATTCTGCCGTTGTCGGTATTCCTGATTTCTATTATAGTAAAGCACTCTCAGAGGTATTTCCGCAATC
AGCAGGAATATCTGGGACATGTAAACGGCCAGGTAGAAGAAGTGTACAGCGGACATAATATTGTAAAAGTATTCAATAAA
GAAGAAGATGTTCTGAAAGAATTCAATAAGATGAACGATACATTGTATCAGTCTGCATGGAAATCTCAGTTTTTTTCAGG
GATGATGATGCCGATCATGCAGTTTGTCGGTAATCTTGGATATGTGGGAGTGACGATACTTGGCGGCTATCTTGCCATCA
AGCAGACCATCGAAGTGGGGGATATCCAGTCGTTTATTCAGTATGTCCGCAGCTTTACCCAGCCAATCCAGCAGGTGGCT
CAGGTGGCAAATATGCTGCAGGCCACGGCGGCAGCTTCCGAACGTGTCTTTGAATTCCTGGAAGAAGAGGAAGAAGAGCA
GTTTGCAGAACATCCGGTATCCGTGGAAGGATTGAAAGGGAATGTAGAATTCCGCCATGTAAAATTTGGCTATCATCCGG
ACAATATCATTATTAAAGACTTCTCCACAAATGTGACAGAAGGGCAGAAGATAGCGATTGTCGGCCCAACAGGGGCAGGA
AAGACGACATTGATCAAGCTTTTAATGCGGTTTTATGATGTGAATGAAGGAGAGATCCTTGTGGATGGCCACAATGTAAA
AGATTTTAATCGGAGTGAACTAAGACATATGTTCGGCATGGTTCTCCAGGATACATGGCTATTTAACGGATCGATCCGAG
ATAATATCCGCTACGGAAAGCTGGATGCTACAGATGAGGAGATCATAGAGGCCGCAAAAGCAGCTCATGCCCATCATTTT
ATCCAGACGCTCCCGAGTGGCTATGATATGGAGCTGAATGAAGAAGCAAGCAACGTATCTCAGGGACAAAAACAGCTTCT
TACGATTGCCAGAGCCATTCTTGCGGATCCGAAGATTCTGATCCTGGATGAAGCAACAAGTTCTGTTGATACAAGGACGG
AAGTGTTGATCCAGAAAGCCATGGATAACCTGATGAAGGGAAGAACAAGTTTTATAATTGCACACAGGCTTTCCACGATA
CGGGATGCGGACCAGATTCTTGTCCTCAAAGATGGAGATATCGTAGAACAGGGAAAACATGAAGAACTGTTGGAAAAGGG
CGGATTTTATGCAGATTTGTACAATTCGCAGTTTGATGACGGAAGTGGGGAAATGGCTTCCTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(379-527)

ABC transporter transmembrane region (ABC_membrane)

(36-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.463

95.717

0.493

Multiple sequence alignment