Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ACAM22_RS08835 Genome accession   NZ_AP028929
Coordinates   1906121..1907074 (-) Length   317 a.a.
NCBI ID   WP_369606698.1    Uniprot ID   A0AAT9G2J7
Organism   Streptococcus sp. SN-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1901121..1912074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM22_RS08810 (MASAN616_17030) - 1901879..1902502 (-) 624 WP_261012397.1 ribonuclease P -
  ACAM22_RS08815 (MASAN616_17040) jag 1902553..1903542 (-) 990 WP_261012396.1 RNA-binding cell elongation regulator Jag/EloR -
  ACAM22_RS08820 (MASAN616_17050) - 1903560..1904384 (-) 825 WP_261059677.1 membrane protein insertase YidC -
  ACAM22_RS08825 (MASAN616_17060) rnpA 1904359..1904730 (-) 372 WP_369606696.1 ribonuclease P protein component -
  ACAM22_RS08830 (MASAN616_17070) - 1904880..1906070 (-) 1191 WP_369606697.1 acetate kinase -
  ACAM22_RS08835 (MASAN616_17080) comYH 1906121..1907074 (-) 954 WP_369606698.1 class I SAM-dependent methyltransferase Machinery gene
  ACAM22_RS08840 (MASAN616_17090) - 1907135..1907722 (-) 588 WP_261059675.1 class I SAM-dependent methyltransferase -
  ACAM22_RS08845 (MASAN616_17100) comGG/cglG 1907755..1908168 (-) 414 WP_173267826.1 competence type IV pilus minor pilin ComGG Machinery gene
  ACAM22_RS08850 (MASAN616_17110) comGF/cglF 1908146..1908607 (-) 462 WP_369606699.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACAM22_RS08855 (MASAN616_17120) comGE/cglE 1908570..1908872 (-) 303 WP_369606700.1 competence type IV pilus minor pilin ComGE Machinery gene
  ACAM22_RS08860 (MASAN616_17130) comGD/cglD 1908835..1909269 (-) 435 WP_369606701.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACAM22_RS08865 (MASAN616_17140) comGC/cglC 1909232..1909555 (-) 324 WP_000738640.1 comG operon protein ComGC Machinery gene
  ACAM22_RS08870 (MASAN616_17150) comGB/cglB 1909557..1910573 (-) 1017 WP_265529580.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACAM22_RS08875 (MASAN616_17160) comGA/cglA/cilD 1910521..1911462 (-) 942 WP_265529564.1 competence type IV pilus ATPase ComGA Machinery gene
  ACAM22_RS08880 (MASAN616_17170) - 1911541..1911906 (-) 366 WP_045606653.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35670.85 Da        Isoelectric Point: 4.2474

>NTDB_id=107356 ACAM22_RS08835 WP_369606698.1 1906121..1907074(-) (comYH) [Streptococcus sp. SN-1]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQVLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELLKEEEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKGWLKEEASLTAMISLPENLFANVKQSKTIFILQKKSETAVEPFVYPLASLQDASILMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=107356 ACAM22_RS08835 WP_369606698.1 1906121..1907074(-) (comYH) [Streptococcus sp. SN-1]
ATGGATTTTGAAAAAATTGAACAAGCTTATACTTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAATAGCATCTATCTGGATGGTGAGACTGAGCTAGAGCAGGTCAAGGAGAACAATC
AAGTCCTTAAGCGCTTAGCGCTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAGACA
GAGCCCTTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGTTGCTTAA
AGAGGAGGAAATTACTATTCTCGAAATGGGGTCTGGGATGGGAATTCTAGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTGATTGGTTTGCAG
GCTGGTTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGCGACTTGCCTGTCGG
TTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGTCAAGAACATACCTACGCTCATCACTTGCTCA
TGGAACAAGGACTTAAGTACCTCAAGTCAGATGGATACGCTATTTTTCTCGCTCCGAGTGATTTGTTGACCAGCCCTCAA
AGTGATTTGTTGAAAGGCTGGTTGAAAGAAGAGGCAAGTCTGACTGCCATGATTAGTTTGCCTGAAAATCTCTTTGCCAA
TGTCAAACAATCCAAGACAATTTTTATCTTACAGAAGAAAAGTGAAACAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTATTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment