Detailed information NTG1073336

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: ACI513_RS17330
• Genome accession: NZ_CP173626
• Coordinates: 3746158..3746811 (-)
• Length: 217 a.a.
• NCBI ID: WP_404985058.1
• Uniprot ID: -
• Organism: Chryseobacterium sp. M5
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3741158..3751811

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI513_RS17315 (ACI513_17315)	der	3742257..3743567 (+)	1311	WP_404985056.1	ribosome biogenesis GTPase Der	-
ACI513_RS17320 (ACI513_17320)	upp	3743644..3744297 (+)	654	WP_204532685.1	uracil phosphoribosyltransferase	-
ACI513_RS17325 (ACI513_17325)	-	3744521..3745981 (+)	1461	WP_404985057.1	hypothetical protein	-
ACI513_RS17330 (ACI513_17330)	comF	3746158..3746811 (-)	654	WP_404985058.1	ComF family protein	Machinery gene
ACI513_RS17335 (ACI513_17335)	-	3746994..3748466 (-)	1473	WP_404985059.1	helix-turn-helix domain-containing protein	-
ACI513_RS17340 (ACI513_17340)	aceB	3748593..3750167 (+)	1575	WP_404985060.1	malate synthase A	-
ACI513_RS17345 (ACI513_17345)	aceA	3750291..3751571 (+)	1281	WP_404985061.1	isocitrate lyase	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25496.52 Da
• Isoelectric Point: 7.2235

>NTDB_id=1073336 ACI513_RS17330 WP_404985058.1 3746158..3746811(-) (comF) [Chryseobacterium sp. M5]
MILDIFFPNRCIHCNRIIDGDLLVCNVCFEQIHFTHFNFFEDNYILEKCKLLFPIENAFALMQFEKENLSRKIIHELKYK
NREKAGKILAEWTTERLDLKNEKPDVLVSVPLHPKKLKERGYNQLHLFTETLSKFYEIPFSHDLIKRNHYSKAQALKDRQ
HRLETQNTFSITENISGKHILLIDDVFTTGNTIASIAWEILKAGDNKVSVLVMAMDE

Nucleotide

• Length: 654 bp

>NTDB_id=1073336 ACI513_RS17330 WP_404985058.1 3746158..3746811(-) (comF) [Chryseobacterium sp. M5]
ATGATTTTAGATATTTTCTTTCCGAATCGTTGCATTCACTGCAACCGGATTATTGACGGCGACTTGCTTGTCTGCAATGT
TTGTTTTGAGCAAATTCACTTTACGCATTTCAACTTTTTTGAGGATAATTATATTTTGGAGAAATGTAAACTTCTTTTTC
CCATTGAAAATGCTTTTGCATTAATGCAGTTTGAAAAGGAAAATTTAAGCCGAAAAATCATCCACGAATTAAAATATAAA
AATCGAGAAAAAGCAGGAAAGATTTTAGCTGAATGGACGACAGAGCGTTTAGATCTCAAAAATGAAAAACCGGATGTATT
GGTTTCTGTTCCATTGCATCCGAAAAAATTAAAAGAGAGAGGTTATAATCAACTGCATTTGTTTACAGAAACATTATCTA
AGTTTTATGAGATTCCTTTTAGTCATGATTTAATTAAAAGAAATCATTATTCAAAAGCACAGGCTTTGAAAGACAGACAA
CATCGTCTTGAAACTCAAAATACTTTTTCCATCACAGAAAATATTTCGGGGAAACATATTTTATTGATTGATGATGTTTT
TACCACCGGAAATACGATTGCTTCAATTGCCTGGGAAATTTTGAAAGCAGGAGACAACAAAGTGAGTGTTTTGGTAATGG
CAATGGATGAATGA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (80-204)

• Double zinc ribbon domain (DZR_2) (2-34)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	54.839	100	0.548