Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACI2O8_RS09065 Genome accession   NZ_CP173415
Coordinates   1717003..1717782 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain FJYA24     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1712003..1722782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI2O8_RS09045 (ACI2O8_09045) trmFO 1712696..1714003 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACI2O8_RS09050 (ACI2O8_09050) xerC 1714071..1714985 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  ACI2O8_RS09055 (ACI2O8_09055) clpQ 1714998..1715543 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ACI2O8_RS09060 (ACI2O8_09060) hslU 1715560..1716963 (+) 1404 WP_003245556.1 HslU--HslV peptidase ATPase subunit -
  ACI2O8_RS09065 (ACI2O8_09065) codY 1717003..1717782 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACI2O8_RS09070 (ACI2O8_09070) flgB 1718162..1718551 (+) 390 WP_029726489.1 flagellar basal body rod protein FlgB -
  ACI2O8_RS09075 (ACI2O8_09075) flgC 1718551..1719003 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  ACI2O8_RS09080 (ACI2O8_09080) fliE 1719014..1719334 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ACI2O8_RS09085 (ACI2O8_09085) fliF 1719380..1720990 (+) 1611 WP_010886506.1 flagellar basal-body MS-ring/collar protein FliF -
  ACI2O8_RS09090 (ACI2O8_09090) fliG 1721003..1722019 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ACI2O8_RS09095 (ACI2O8_09095) fliH 1722012..1722764 (+) 753 WP_003244804.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1072096 ACI2O8_RS09065 WP_003220850.1 1717003..1717782(+) (codY) [Bacillus subtilis strain FJYA24]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1072096 ACI2O8_RS09065 WP_003220850.1 1717003..1717782(+) (codY) [Bacillus subtilis strain FJYA24]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTAGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment