Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACI3L8_RS06460 Genome accession   NZ_CP173391
Coordinates   1438866..1439591 (+) Length   241 a.a.
NCBI ID   WP_077262007.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433866..1444591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L8_RS06445 (ACI3L8_06445) - 1434991..1437312 (+) 2322 WP_017189965.1 Tex family protein -
  ACI3L8_RS06450 (ACI3L8_06450) - 1437417..1437881 (-) 465 WP_005430182.1 hypothetical protein -
  ACI3L8_RS06455 (ACI3L8_06455) bioH 1438017..1438781 (-) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  ACI3L8_RS06460 (ACI3L8_06460) comF 1438866..1439591 (+) 726 WP_077262007.1 ComF family protein Machinery gene
  ACI3L8_RS06465 (ACI3L8_06465) nfuA 1439689..1440273 (+) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  ACI3L8_RS06470 (ACI3L8_06470) nudE 1440449..1441015 (+) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  ACI3L8_RS06475 (ACI3L8_06475) cysQ 1441063..1441890 (+) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACI3L8_RS06480 (ACI3L8_06480) - 1442181..1442942 (-) 762 WP_010650510.1 type II secretion system protein N -
  ACI3L8_RS06485 (ACI3L8_06485) - 1442944..1443435 (-) 492 WP_005430160.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27676.79 Da        Isoelectric Point: 7.9917

>NTDB_id=1072008 ACI3L8_RS06460 WP_077262007.1 1438866..1439591(+) (comF) [Vibrio campbellii strain LB3]
MLSHQWQNIMHRVLSSQCGLCRFPMPHRQTPNLMRWCDSCFDHLTPIERCVRCGLKMTEEESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1072008 ACI3L8_RS06460 WP_077262007.1 1438866..1439591(+) (comF) [Vibrio campbellii strain LB3]
ATGTTATCTCATCAATGGCAAAACATCATGCACCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATGCCTCA
CCGCCAAACACCCAACCTAATGCGTTGGTGTGATAGCTGTTTTGACCATCTCACACCAATTGAGCGCTGCGTACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

98.34

100

0.983
  comF Vibrio cholerae strain A1552

47.059

98.755

0.465

Multiple sequence alignment