Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACI3L5_RS01690 Genome accession   NZ_CP173389
Coordinates   360875..361600 (-) Length   241 a.a.
NCBI ID   WP_081234447.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 355875..366600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L5_RS01665 (ACI3L5_01665) - 357031..357522 (+) 492 WP_005430160.1 type II secretion system protein M -
  ACI3L5_RS01670 (ACI3L5_01670) - 357524..358285 (+) 762 WP_404973371.1 type II secretion system protein N -
  ACI3L5_RS01675 (ACI3L5_01675) cysQ 358576..359403 (-) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACI3L5_RS01680 (ACI3L5_01680) nudE 359451..360017 (-) 567 WP_404973372.1 ADP compounds hydrolase NudE -
  ACI3L5_RS01685 (ACI3L5_01685) nfuA 360193..360777 (-) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  ACI3L5_RS01690 (ACI3L5_01690) comF 360875..361600 (-) 726 WP_081234447.1 ComF family protein Machinery gene
  ACI3L5_RS01695 (ACI3L5_01695) bioH 361685..362449 (+) 765 WP_077201292.1 pimeloyl-ACP methyl ester esterase BioH -
  ACI3L5_RS01700 (ACI3L5_01700) - 362585..363049 (+) 465 WP_005430182.1 hypothetical protein -
  ACI3L5_RS01705 (ACI3L5_01705) - 363154..365475 (-) 2322 WP_404973373.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27737.93 Da        Isoelectric Point: 8.2981

>NTDB_id=1071952 ACI3L5_RS01690 WP_081234447.1 360875..361600(-) (comF) [Vibrio campbellii strain LB10]
MLSHQWQNIMHRVLSSQCGLCRFPMPHRQTPNLMRWCESCFDHLTPIERCMRCGLKMTEKESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLSHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1071952 ACI3L5_RS01690 WP_081234447.1 360875..361600(-) (comF) [Vibrio campbellii strain LB10]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATGCCTCA
CCGCCAAACGCCCAACTTAATGCGTTGGTGTGAAAGCTGTTTTGACCACCTCACACCAATTGAGCGCTGCATGCGTTGTG
GTTTAAAAATGACAGAAAAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAACCACCACCATGGCGGCGT
TTGTATACCTTGGGTGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCTCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAATAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

97.51

100

0.975
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461

Multiple sequence alignment