Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACI3L7_RS04625 Genome accession   NZ_CP173387
Coordinates   980625..981350 (-) Length   241 a.a.
NCBI ID   WP_404970288.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB135     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975625..986350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L7_RS04600 (ACI3L7_04600) - 976781..977272 (+) 492 WP_005430160.1 type II secretion system protein M -
  ACI3L7_RS04605 (ACI3L7_04605) - 977274..978035 (+) 762 WP_010650510.1 type II secretion system protein N -
  ACI3L7_RS04610 (ACI3L7_04610) cysQ 978326..979153 (-) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACI3L7_RS04615 (ACI3L7_04615) nudE 979201..979767 (-) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  ACI3L7_RS04620 (ACI3L7_04620) nfuA 979943..980527 (-) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  ACI3L7_RS04625 (ACI3L7_04625) comF 980625..981350 (-) 726 WP_404970288.1 ComF family protein Machinery gene
  ACI3L7_RS04630 (ACI3L7_04630) bioH 981435..982199 (+) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  ACI3L7_RS04635 (ACI3L7_04635) - 982335..982799 (+) 465 WP_240304836.1 ATP-dependent Lon protease -
  ACI3L7_RS04640 (ACI3L7_04640) - 982903..985224 (-) 2322 WP_050904726.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27672.87 Da        Isoelectric Point: 8.5783

>NTDB_id=1071923 ACI3L7_RS04625 WP_404970288.1 980625..981350(-) (comF) [Vibrio campbellii strain LB135]
MLSHQWKNIMHRVLSSQCGLCRFPMPHRQTPNLIRWCDSCFDHLTPIQRCVRCGLKMTEKESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLSHHLDVRYEN
KVFKRVKNVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1071923 ACI3L7_RS04625 WP_404970288.1 980625..981350(-) (comF) [Vibrio campbellii strain LB135]
ATGTTATCTCATCAATGGAAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATGCCTCA
CCGCCAAACGCCCAACCTAATACGTTGGTGTGATAGCTGTTTTGACCACCTCACACCAATCCAACGCTGCGTGCGTTGTG
GTTTAAAAATGACAGAAAAGGAATCACAAGCCGCTACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCTCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAACGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

96.266

100

0.963
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461

Multiple sequence alignment