Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACI3L6_RS14785 Genome accession   NZ_CP173383
Coordinates   3289671..3290396 (-) Length   241 a.a.
NCBI ID   WP_077201184.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB314     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3284671..3295396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3L6_RS14760 (ACI3L6_14760) - 3285827..3286318 (+) 492 WP_005430160.1 type II secretion system protein M -
  ACI3L6_RS14765 (ACI3L6_14765) - 3286320..3287081 (+) 762 WP_005430117.1 type II secretion system protein N -
  ACI3L6_RS14770 (ACI3L6_14770) cysQ 3287372..3288199 (-) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACI3L6_RS14775 (ACI3L6_14775) nudE 3288247..3288813 (-) 567 WP_005430103.1 ADP compounds hydrolase NudE -
  ACI3L6_RS14780 (ACI3L6_14780) nfuA 3288989..3289573 (-) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  ACI3L6_RS14785 (ACI3L6_14785) comF 3289671..3290396 (-) 726 WP_077201184.1 ComF family protein Machinery gene
  ACI3L6_RS14790 (ACI3L6_14790) bioH 3290481..3291245 (+) 765 WP_077201292.1 pimeloyl-ACP methyl ester esterase BioH -
  ACI3L6_RS14795 (ACI3L6_14795) - 3291381..3291845 (+) 465 WP_077201183.1 ATP-dependent Lon protease -
  ACI3L6_RS14800 (ACI3L6_14800) - 3291950..3294271 (-) 2322 WP_050904726.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27648.82 Da        Isoelectric Point: 8.2981

>NTDB_id=1071837 ACI3L6_RS14785 WP_077201184.1 3289671..3290396(-) (comF) [Vibrio campbellii strain LB314]
MLSHQWQNIMHRVLGSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIERCMRCGLKMTEKESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLSHHLDVRYEN
KVFKRVKSVQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1071837 ACI3L6_RS14785 WP_077201184.1 3289671..3290396(-) (comF) [Vibrio campbellii strain LB314]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTTGGCAGCCAATGTGGTTTGTGTCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATTGAGCGCTGCATGCGTTGTG
GTTTAAAAATGACAGAAAAGGAATCACAAGCCGCCACAGAGTGTGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGGGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCTCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAGCGTCCAATCACAACGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

97.51

100

0.975
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461

Multiple sequence alignment