Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACIRUQ_RS09700 Genome accession   NZ_CP173382
Coordinates   2046002..2047849 (-) Length   615 a.a.
NCBI ID   WP_055290251.1    Uniprot ID   A0A173TPU7
Organism   Eubacterium ramulus strain JCM 31335     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2041002..2052849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRUQ_RS09680 (ACIRUQ_09680) - 2041214..2042146 (-) 933 WP_021740241.1 amidohydrolase family protein -
  ACIRUQ_RS09685 (ACIRUQ_09685) - 2042248..2042856 (-) 609 WP_055290249.1 HD domain-containing protein -
  ACIRUQ_RS09690 (ACIRUQ_09690) asnA 2043040..2044050 (+) 1011 WP_021740243.1 aspartate--ammonia ligase -
  ACIRUQ_RS09695 (ACIRUQ_09695) - 2044427..2045761 (+) 1335 WP_055290250.1 MATE family efflux transporter -
  ACIRUQ_RS09700 (ACIRUQ_09700) rcrQ 2046002..2047849 (-) 1848 WP_055290251.1 ABC transporter ATP-binding protein Regulator
  ACIRUQ_RS09705 (ACIRUQ_09705) - 2047842..2050169 (-) 2328 WP_055290252.1 ABC transporter ATP-binding protein -
  ACIRUQ_RS09710 (ACIRUQ_09710) - 2050220..2050858 (-) 639 WP_021740247.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 67834.56 Da        Isoelectric Point: 6.9336

>NTDB_id=1071796 ACIRUQ_RS09700 WP_055290251.1 2046002..2047849(-) (rcrQ) [Eubacterium ramulus strain JCM 31335]
MSNERNIHSASRPRRRMGPGRGMVPGEKAKDLKGALGKILRYMGKYKIAVVFVMIIAACSTVFSVLGPKVLGKATTGLAE
GLMAKVAGTGGIDFSYIGKVLLFVLGLYLLSSVLSFVQGWIMTGITQKICYRMRKEITEKINRMPMKYFESRTYGEVLSR
ITNDVDTLGMGLNQSVTQIITSTATIIGVLVMMLSISPLMTLIALVVLPVSGLCVSLVVKKSQKHFITQQEYLGHINGQV
EESYGGHLVIKAYNKEDEMIARFNRTNDVLYTSAWKSQFLSGIMMPIMQFVGNLGYAAVALSGGMLAIRGVITIGDIQAF
IQYVKSFTQPIQQIAQVTNQVQSMAAAAERVFEFLEEEEEDQVVEHPADVTKVIGNVAFDHVSFGYNPNQLIVHDFSAQV
AAGQKIAIVGPTGAGKTTMVKLLMRFYDVNSGSIRIDGHDIREFNRRELRDAFGMVLQDTWLFKGSIMENIRYGRLDATD
EEVVAAAKAAHADHFIRTLPGGYEMELNEDASNISQGQKQLLTIARAILADNRILILDEATSSVDTRTEELIQSAMDNLM
KGRTSFVIAHRLSTIKNADIILVMKDGDIIEQGSHEELLEQGGFYADLYNSQFAE

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=1071796 ACIRUQ_RS09700 WP_055290251.1 2046002..2047849(-) (rcrQ) [Eubacterium ramulus strain JCM 31335]
ATGAGTAATGAAAGAAATATACATTCTGCTTCCCGACCGAGACGCAGAATGGGACCGGGCAGAGGGATGGTCCCGGGTGA
AAAGGCAAAAGATCTGAAAGGTGCCCTTGGAAAAATTCTCCGCTATATGGGAAAATATAAGATCGCCGTTGTGTTTGTCA
TGATCATCGCGGCATGTTCCACAGTATTCAGTGTGCTTGGCCCGAAGGTACTTGGTAAGGCGACGACAGGCCTGGCAGAA
GGTCTGATGGCAAAAGTAGCCGGAACCGGCGGCATTGATTTTTCCTATATAGGAAAAGTGCTGCTGTTTGTACTTGGTTT
ATATCTGCTCAGCTCTGTCCTGAGTTTTGTGCAGGGATGGATCATGACCGGTATCACACAGAAAATCTGTTACCGGATGC
GAAAAGAAATTACAGAAAAAATAAACCGCATGCCGATGAAATATTTTGAGAGCCGTACTTACGGTGAAGTGTTATCCAGA
ATTACGAATGATGTGGATACGCTGGGGATGGGGTTAAACCAGAGTGTGACCCAGATCATTACATCTACGGCCACCATCAT
CGGTGTGCTGGTGATGATGCTCAGTATTTCTCCGCTGATGACACTGATCGCGCTGGTGGTACTGCCGGTTTCGGGGTTGT
GTGTTTCTCTGGTGGTGAAAAAATCCCAGAAGCATTTCATTACACAGCAGGAGTACCTGGGACATATCAATGGACAGGTA
GAAGAAAGCTATGGTGGTCATCTGGTCATCAAAGCTTACAACAAAGAAGATGAAATGATTGCCCGGTTTAACCGGACAAA
TGATGTATTATATACTTCTGCATGGAAATCCCAGTTCCTTTCCGGAATCATGATGCCGATCATGCAGTTTGTCGGAAATC
TGGGGTATGCGGCAGTGGCACTCAGTGGTGGTATGCTGGCCATTCGAGGCGTGATCACCATCGGTGATATCCAGGCATTT
ATCCAGTATGTGAAGAGTTTTACGCAGCCGATCCAGCAGATCGCACAGGTAACAAATCAGGTGCAATCTATGGCAGCGGC
AGCAGAGCGTGTGTTTGAATTCCTGGAGGAAGAGGAAGAAGATCAGGTAGTGGAGCATCCGGCAGATGTGACAAAAGTGA
TTGGAAATGTAGCGTTTGATCATGTAAGTTTTGGTTATAATCCGAACCAGCTCATTGTGCATGATTTCAGTGCACAGGTG
GCTGCCGGACAGAAGATTGCCATTGTTGGTCCGACGGGAGCCGGCAAGACTACCATGGTGAAACTGCTGATGCGTTTCTA
TGATGTCAACAGCGGATCTATCCGTATTGACGGACACGATATCCGGGAGTTCAATCGCCGGGAGCTGAGAGATGCGTTTG
GAATGGTATTGCAGGATACCTGGCTTTTTAAAGGAAGTATCATGGAAAATATCCGTTATGGACGTTTGGATGCTACGGAT
GAAGAAGTTGTAGCAGCCGCAAAAGCAGCTCATGCGGATCATTTTATCCGGACACTGCCTGGTGGCTATGAGATGGAACT
GAATGAAGATGCCAGCAATATTTCACAGGGACAAAAGCAGTTGTTGACAATTGCAAGAGCGATTCTGGCAGATAACCGCA
TTCTGATTCTGGATGAGGCGACTTCTTCTGTGGATACCAGAACGGAAGAACTGATCCAGAGTGCCATGGATAACCTGATG
AAAGGACGGACCAGTTTCGTGATCGCACACCGCCTGTCCACGATCAAAAATGCGGATATTATTCTCGTTATGAAAGATGG
AGATATCATCGAGCAGGGATCCCATGAGGAACTGCTGGAACAGGGTGGTTTTTATGCGGATCTGTATAACAGCCAGTTCG
CGGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(51-330)

ABC transporter (ABC_tran)

(394-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A173TPU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.943

94.797

0.483

Multiple sequence alignment