Detailed information NTG1071352

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: GGGNBK_RS13995
• Genome accession: NZ_CP173271
• Coordinates: 2977698..2980148 (-)
• Length: 816 a.a.
• NCBI ID: WP_255452128.1
• Uniprot ID: -
• Organism: Sporosarcina sp. ANT_H38
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2972698..2985148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GGGNBK_RS13975 (GGGNBK_14365)	-	2973511..2973807 (-)	297	WP_149579174.1	DUF1292 domain-containing protein	-
GGGNBK_RS13980 (GGGNBK_14370)	ruvX	2973818..2974237 (-)	420	WP_149579173.1	Holliday junction resolvase RuvX	-
GGGNBK_RS13985 (GGGNBK_14375)	-	2974234..2974506 (-)	273	WP_149579172.1	IreB family regulatory phosphoprotein	-
GGGNBK_RS13990 (GGGNBK_14380)	alaS	2974589..2977222 (-)	2634	WP_149579171.1	alanine--tRNA ligase	-
GGGNBK_RS13995 (GGGNBK_14385)	recD2	2977698..2980148 (-)	2451	WP_255452128.1	ATP-dependent RecD-like DNA helicase	Machinery gene
GGGNBK_RS14000 (GGGNBK_14390)	-	2980164..2980829 (-)	666	WP_149579170.1	tetratricopeptide repeat protein	-
GGGNBK_RS14005 (GGGNBK_14395)	mnmA	2980843..2981964 (-)	1122	WP_149579169.1	tRNA 2-thiouridine(34) synthase MnmA	-
GGGNBK_RS14010 (GGGNBK_14400)	-	2981988..2983130 (-)	1143	WP_149579168.1	cysteine desulfurase family protein	-
GGGNBK_RS14015 (GGGNBK_14405)	cymR	2983143..2983562 (-)	420	WP_149579167.1	cysteine metabolism transcriptional regulator CymR	-
GGGNBK_RS14020 (GGGNBK_14410)	-	2983690..2984976 (+)	1287	WP_149579166.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 90729.32 Da
• Isoelectric Point: 4.9812

>NTDB_id=1071352 GGGNBK_RS13995 WP_255452128.1 2977698..2980148(-) (recD2) [Sporosarcina sp. ANT_H38]
MEGNNMAGNTDEIFLIGRPVVTIFHNPDSLFTIAKLKVRETNSGNEDKEIIVKGSFPQLNPEDDYKFTGKLVNHPTYGAQ
FDVHTFAKEMPATETGLVHYLSGDLFPGIGMKTAQTIVKKLGKDAIKKILDDPSVLGLVPKLSDEKKETIVSVLEQNMGL
ERTIIQLNEWGFGPQIAMRIYQKYREESVSLLTENPYRLIEEIEGVGFQRADELGKNLGITGNHPSRIKAAILHSMNQAV
QSAGHVFVEAEAVLPDVKRLLEMSQRVDIPFSDISQAIIVLVEEGKLSAEERRLYIPSLYFSEIGIAAKLERIMGNDTAD
QFPVSEIRKAVGEVEERLGVNYAETQVAAIETALHSPLMILTGGPGTGKTTVIRGFVEVYAELHGLSLDPKEYAKKKEPF
PIVLAAPTGRAAKRMSESTGLPAMTIHRLLGFNGLEKEEETEREIEGRLIIIDEMSMVDTWLAHQLLKALANDVQLLFVG
DQDQLPPVGPGQVLRDMLDSGKVPVIELTEVFRQSEGSSIIEMAHMIKRSEWTDDITKKTSDRSFIKAGSDRILEVVEQV
VKNAITKGHPIKDIQVLAPMYRGPAGIDGLNKMIQEMVNPPGPKRKEVVFGEAIYRIGDKVLQLVNQPESNVFNGDMGEV
IAIIKAKETIDKKELLVVSYDGIEVTYERNDLNQLTLAYCCSIHKSQGSEFPIVIMPIVRGHRKMLRRNLLYTGITRAKN
FLILCGEPEEFRAGIARTDELERQTTLKERLNGDVVEPEVVEVSEHVNAEVSKESNVGSFDSKPVIFTLTMETFLSIDPL
IGMKGVTPYEFLEVSD

Nucleotide

• Length: 2451 bp

>NTDB_id=1071352 GGGNBK_RS13995 WP_255452128.1 2977698..2980148(-) (recD2) [Sporosarcina sp. ANT_H38]
ATGGAAGGGAACAACATGGCGGGGAATACGGATGAAATCTTTTTGATTGGACGACCAGTCGTGACAATCTTCCATAACCC
CGACAGCCTTTTTACAATCGCGAAGTTAAAAGTTCGTGAAACTAATAGTGGGAATGAAGATAAAGAAATCATTGTTAAAG
GCAGTTTTCCGCAACTGAATCCTGAAGATGACTACAAATTTACAGGAAAGCTCGTTAATCATCCAACATATGGTGCACAG
TTCGATGTGCATACCTTCGCAAAAGAGATGCCTGCAACGGAAACGGGACTCGTGCATTATTTGTCAGGTGATTTATTTCC
AGGTATTGGGATGAAGACAGCTCAAACAATTGTCAAAAAGCTCGGCAAGGATGCCATTAAAAAAATCCTTGACGATCCAT
CTGTCCTTGGTCTGGTCCCAAAGTTATCCGACGAGAAAAAAGAGACAATTGTCTCGGTCCTCGAACAAAATATGGGACTT
GAGCGAACAATCATCCAGTTAAATGAATGGGGATTTGGACCGCAAATCGCAATGCGCATTTATCAGAAGTATCGTGAAGA
ATCCGTTTCATTGCTGACTGAAAATCCCTATCGACTTATTGAAGAAATCGAAGGGGTAGGTTTTCAACGTGCGGACGAAC
TCGGTAAAAATTTAGGCATTACAGGAAACCATCCTTCTAGAATTAAAGCGGCTATCCTTCATTCGATGAACCAGGCCGTG
CAATCAGCCGGTCATGTGTTCGTGGAAGCAGAAGCCGTCTTACCAGATGTGAAACGCCTACTTGAAATGAGTCAGCGTGT
GGATATTCCATTTTCTGATATTTCCCAGGCAATTATTGTACTTGTCGAGGAAGGGAAACTATCTGCTGAAGAACGAAGAC
TTTACATACCGTCCCTTTACTTTTCAGAAATCGGAATCGCTGCAAAGCTCGAGCGGATTATGGGGAATGACACAGCTGAT
CAATTTCCTGTATCTGAAATAAGAAAAGCGGTCGGGGAAGTTGAAGAGCGACTCGGCGTCAATTATGCAGAAACGCAAGT
AGCAGCGATTGAAACAGCACTTCATTCGCCATTAATGATCTTAACAGGTGGTCCCGGAACAGGAAAAACAACAGTTATTC
GTGGTTTTGTCGAAGTGTATGCAGAACTCCATGGATTGTCGCTCGACCCGAAAGAGTATGCCAAAAAGAAAGAACCATTC
CCGATTGTATTGGCGGCACCGACTGGACGAGCAGCAAAGCGTATGTCGGAATCGACTGGATTACCTGCAATGACAATTCA
CCGACTGCTTGGATTTAATGGGTTGGAAAAGGAAGAAGAGACTGAGCGGGAAATTGAAGGTCGTCTAATTATTATCGATG
AAATGTCGATGGTCGATACTTGGCTTGCACACCAGCTATTAAAGGCGCTTGCCAATGATGTCCAACTGTTATTTGTTGGG
GACCAAGACCAGTTGCCGCCTGTTGGACCAGGTCAAGTACTTCGGGATATGCTAGATTCCGGTAAAGTTCCTGTCATTGA
GCTGACTGAAGTATTTCGGCAAAGTGAAGGATCATCAATTATTGAAATGGCTCATATGATTAAACGGTCTGAATGGACAG
ACGATATTACTAAGAAAACATCGGATCGTTCATTTATCAAAGCGGGCAGCGATCGGATTCTCGAAGTTGTTGAGCAAGTC
GTGAAAAATGCCATTACCAAAGGCCATCCCATCAAAGACATTCAGGTTCTTGCGCCGATGTATAGGGGGCCGGCGGGCAT
CGATGGTTTAAACAAAATGATTCAGGAAATGGTTAATCCGCCAGGACCGAAACGCAAAGAAGTGGTTTTTGGCGAAGCGA
TTTACCGAATCGGTGATAAAGTGCTTCAGCTTGTCAATCAGCCCGAAAGCAATGTTTTCAACGGCGATATGGGCGAAGTC
ATCGCGATTATCAAAGCGAAAGAAACAATCGATAAAAAAGAGTTACTCGTTGTTTCGTACGATGGCATAGAAGTCACCTA
TGAGCGTAACGATCTAAACCAGCTCACACTTGCTTATTGCTGTTCGATTCACAAATCTCAGGGCAGTGAATTCCCAATTG
TTATTATGCCAATCGTCCGCGGTCATCGTAAAATGCTAAGGCGTAATTTGTTATACACAGGCATCACTCGTGCGAAAAAC
TTCCTCATCCTCTGTGGAGAGCCTGAAGAGTTCAGAGCGGGCATTGCTCGCACCGATGAATTGGAAAGACAGACGACACT
AAAAGAACGGCTAAATGGCGATGTCGTTGAACCTGAGGTTGTCGAGGTTTCGGAACATGTAAATGCAGAAGTTTCTAAGG
AGTCGAATGTAGGTTCATTTGATTCGAAACCTGTCATATTTACACTAACTATGGAAACTTTCCTGTCAATTGATCCGTTG
ATTGGCATGAAAGGGGTAACGCCATATGAATTTCTTGAAGTTTCAGATTGA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• AAA domain (AAA_30) (342-550)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (590-649)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.723	99.02	0.522