Detailed information NTG1071168

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ABXH30_RS08505
• Genome accession: NZ_CP173259
• Coordinates: 1688360..1689139 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain XW38
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1683360..1694139

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABXH30_RS08485 (ABXH30_08485)	trmFO	1684047..1685354 (+)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ABXH30_RS08490 (ABXH30_08490)	xerC	1685424..1686341 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ABXH30_RS08495 (ABXH30_08495)	hslV	1686357..1686902 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ABXH30_RS08500 (ABXH30_08500)	hslU	1686919..1688322 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ABXH30_RS08505 (ABXH30_08505)	codY	1688360..1689139 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ABXH30_RS08510 (ABXH30_08510)	flgB	1689493..1689882 (+)	390	WP_095315390.1	flagellar basal body rod protein FlgB	-
ABXH30_RS08515 (ABXH30_08515)	flgC	1689882..1690334 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ABXH30_RS08520 (ABXH30_08520)	fliE	1690345..1690665 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ABXH30_RS08525 (ABXH30_08525)	fliF	1690708..1692318 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ABXH30_RS08530 (ABXH30_08530)	fliG	1692331..1693347 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ABXH30_RS08535 (ABXH30_08535)	fliH	1693340..1694095 (+)	756	WP_003154255.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1071168 ABXH30_RS08505 WP_003154263.1 1688360..1689139(+) (codY) [Bacillus velezensis strain XW38]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1071168 ABXH30_RS08505 WP_003154263.1 1688360..1689139(+) (codY) [Bacillus velezensis strain XW38]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTCGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCTCTGGGTATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471