Detailed information
Bioinformatically predicted
Overview
| Name | comN | Type | Machinery gene |
| Locus tag | ACIRXM_RS01515 | Genome accession | NZ_CP173234 |
| Coordinates | 276351..276872 (+) | Length | 173 a.a. |
| NCBI ID | WP_017806950.1 | Uniprot ID | A0A0F5ER87 |
| Organism | Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 271351..281872
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACIRXM_RS01475 (ACIRXM_01480) | tolQ | 271582..272265 (+) | 684 | WP_410686954.1 | protein TolQ | - |
| ACIRXM_RS01480 (ACIRXM_01485) | tolR | 272317..272739 (+) | 423 | WP_046098639.1 | colicin uptake protein TolR | - |
| ACIRXM_RS01485 (ACIRXM_01490) | tolA | 272756..273907 (+) | 1152 | WP_410686956.1 | cell envelope integrity protein TolA | - |
| ACIRXM_RS01490 (ACIRXM_01495) | tolB | 273959..275248 (+) | 1290 | WP_410687936.1 | Tol-Pal system beta propeller repeat protein TolB | - |
| ACIRXM_RS01495 (ACIRXM_01500) | pal | 275259..275711 (+) | 453 | WP_017806949.1 | peptidoglycan-associated lipoprotein Pal | - |
| ACIRXM_RS01515 (ACIRXM_01520) | comN | 276351..276872 (+) | 522 | WP_017806950.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| ACIRXM_RS01520 (ACIRXM_01525) | - | 276874..277593 (+) | 720 | WP_410686959.1 | hypothetical protein | - |
| ACIRXM_RS01525 (ACIRXM_01530) | - | 277595..278260 (+) | 666 | WP_410686961.1 | DUF2572 family protein | - |
| ACIRXM_RS01530 (ACIRXM_01535) | - | 278241..278546 (+) | 306 | WP_017806953.1 | DUF5374 domain-containing protein | - |
Sequence
Protein
Download Length: 173 a.a. Molecular weight: 20049.50 Da Isoelectric Point: 8.4767
>NTDB_id=1071063 ACIRXM_RS01515 WP_017806950.1 276351..276872(+) (comN) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLSKKWCISA
QIKQDKICNCLQPQYCSNELMVNIYTPMFPQETMIISKNYYPKEMARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKDISSLSACGDK
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLSKKWCISA
QIKQDKICNCLQPQYCSNELMVNIYTPMFPQETMIISKNYYPKEMARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKDISSLSACGDK
Nucleotide
Download Length: 522 bp
>NTDB_id=1071063 ACIRXM_RS01515 WP_017806950.1 276351..276872(+) (comN) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCACTGCC
AATTTGGCAACAAAATCATAATGAAGCGGTGCTTGAAAAAGAGCAGCATAGACTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAGTAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTACAGCCCCAATATTGTTCCAATGAATTAATGGTTAATATTTATACGCC
GATGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATGGCAAGACTGAGCGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCAGGAGATAAACGAACGCTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGATATCTCTTCTTTGAGTGCTTGTGGAGATAAGTAA
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCACTGCC
AATTTGGCAACAAAATCATAATGAAGCGGTGCTTGAAAAAGAGCAGCATAGACTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAGTAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTACAGCCCCAATATTGTTCCAATGAATTAATGGTTAATATTTATACGCC
GATGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATGGCAAGACTGAGCGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCAGGAGATAAACGAACGCTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGATATCTCTTCTTTGAGTGCTTGTGGAGATAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comN | Haemophilus influenzae Rd KW20 |
51.786 |
97.11 |
0.503 |