Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ACIO08_RS08395 Genome accession   NZ_CP173233
Coordinates   1727587..1728108 (-) Length   173 a.a.
NCBI ID   WP_264256500.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1722587..1733108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS08380 (ACIO08_08380) - 1725914..1726219 (-) 306 WP_017806953.1 DUF5374 domain-containing protein -
  ACIO08_RS08385 (ACIO08_08385) - 1726200..1726865 (-) 666 WP_264256498.1 DUF2572 family protein -
  ACIO08_RS08390 (ACIO08_08390) - 1726867..1727586 (-) 720 WP_264256499.1 hypothetical protein -
  ACIO08_RS08395 (ACIO08_08395) comN 1727587..1728108 (-) 522 WP_264256500.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO08_RS08415 (ACIO08_08415) pal 1728748..1729200 (-) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO08_RS08420 (ACIO08_08420) tolB 1729211..1730500 (-) 1290 WP_264256502.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO08_RS08425 (ACIO08_08425) tolA 1730552..1731757 (-) 1206 WP_410677984.1 cell envelope integrity protein TolA -
  ACIO08_RS08430 (ACIO08_08430) tolR 1731774..1732196 (-) 423 WP_046098639.1 colicin uptake protein TolR -
  ACIO08_RS08435 (ACIO08_08435) tolQ 1732248..1732931 (-) 684 WP_046098640.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20000.35 Da        Isoelectric Point: 8.4767

>NTDB_id=1071048 ACIO08_RS08395 WP_264256500.1 1727587..1728108(-) (comN) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLNKKWCISA
QIKQDKICNCLQPQYCSNELMANIYTPTFPQETMIISKNYYPKEIARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKDISSLSACGDK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1071048 ACIO08_RS08395 WP_264256500.1 1727587..1728108(-) (comN) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCATTGCC
AATTTGGCAACAAAATCATAATGAAGCGGTGCTTGAAAAAGAGCAGCATAGGCTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAATAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTACAGCCCCAATATTGTTCCAATGAATTAATGGCTAATATTTATACGCC
GACGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATAGCAAGACTGAGTGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCAGGAGATAAACGAACGCTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGATATCTCTTCTTTGAGTGCTTGTGGAGATAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

52.976

97.11

0.514

Multiple sequence alignment