Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ACIO05_RS11465 Genome accession   NZ_CP173232
Coordinates   2399182..2399703 (+) Length   173 a.a.
NCBI ID   WP_264256500.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2394182..2404703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO05_RS11425 (ACIO05_11425) tolQ 2394362..2395045 (+) 684 WP_046098640.1 protein TolQ -
  ACIO05_RS11430 (ACIO05_11430) tolR 2395097..2395519 (+) 423 WP_046098639.1 colicin uptake protein TolR -
  ACIO05_RS11435 (ACIO05_11435) tolA 2395536..2396738 (+) 1203 WP_264256503.1 cell envelope integrity protein TolA -
  ACIO05_RS11440 (ACIO05_11440) tolB 2396790..2398079 (+) 1290 WP_264256502.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO05_RS11445 (ACIO05_11445) pal 2398090..2398542 (+) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO05_RS11465 (ACIO05_11465) comN 2399182..2399703 (+) 522 WP_264256500.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO05_RS11470 (ACIO05_11470) - 2399704..2400423 (+) 720 WP_264256499.1 hypothetical protein -
  ACIO05_RS11475 (ACIO05_11475) - 2400425..2401090 (+) 666 WP_264256498.1 DUF2572 family protein -
  ACIO05_RS11480 (ACIO05_11480) - 2401071..2401376 (+) 306 WP_017806953.1 DUF5374 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20000.35 Da        Isoelectric Point: 8.4767

>NTDB_id=1071031 ACIO05_RS11465 WP_264256500.1 2399182..2399703(+) (comN) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLNKKWCISA
QIKQDKICNCLQPQYCSNELMANIYTPTFPQETMIISKNYYPKEIARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKDISSLSACGDK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1071031 ACIO05_RS11465 WP_264256500.1 2399182..2399703(+) (comN) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCATTGCC
AATTTGGCAACAAAATCATAATGAAGCGGTGCTTGAAAAAGAGCAGCATAGGCTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAATAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTACAGCCCCAATATTGTTCCAATGAATTAATGGCTAATATTTATACGCC
GACGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATAGCAAGACTGAGTGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCAGGAGATAAACGAACGCTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGATATCTCTTCTTTGAGTGCTTGTGGAGATAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

52.976

97.11

0.514

Multiple sequence alignment