Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ACIO04_RS04825 Genome accession   NZ_CP173229
Coordinates   995629..996150 (+) Length   173 a.a.
NCBI ID   WP_410680849.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 990629..1001150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO04_RS04785 (ACIO04_04785) tolQ 990893..991576 (+) 684 WP_046098640.1 protein TolQ -
  ACIO04_RS04790 (ACIO04_04790) tolR 991628..992050 (+) 423 WP_410680845.1 colicin uptake protein TolR -
  ACIO04_RS04795 (ACIO04_04795) tolA 992067..993185 (+) 1119 WP_410680847.1 cell envelope integrity protein TolA -
  ACIO04_RS04800 (ACIO04_04800) tolB 993237..994526 (+) 1290 WP_410681049.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO04_RS04805 (ACIO04_04805) pal 994537..994989 (+) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO04_RS04825 (ACIO04_04825) comN 995629..996150 (+) 522 WP_410680849.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO04_RS04830 (ACIO04_04830) - 996152..996871 (+) 720 WP_264245430.1 hypothetical protein -
  ACIO04_RS04835 (ACIO04_04835) - 996873..997538 (+) 666 WP_410680851.1 DUF2572 family protein -
  ACIO04_RS04840 (ACIO04_04840) - 997519..997824 (+) 306 WP_017806953.1 DUF5374 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20031.47 Da        Isoelectric Point: 8.4767

>NTDB_id=1070930 ACIO04_RS04825 WP_410680849.1 995629..996150(+) (comN) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLSKKWCISA
QIKQDKICNCLQPQYCSNELMVNIYTPIFPQETMIISKNYYPKEMARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKDISSLSACGDK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1070930 ACIO04_RS04825 WP_410680849.1 995629..996150(+) (comN) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCATTGCC
AATTTGGCAACAAAATCATAATGAAGCGGTGCTTGAAAAAGAGCAGCATAGGCTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAGCAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTACAGCCCCAATATTGTTCCAATGAATTAATGGTTAATATTTATACGCC
GATATTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATGGCAAGACTGAGTGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCAGGAGATAAACGAACGCTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGATATCTCTTCTTTGAGTGCTTGTGGAGATAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

51.786

97.11

0.503

Multiple sequence alignment