Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   ACIO07_RS05065 Genome accession   NZ_CP173228
Coordinates   978318..978839 (-) Length   173 a.a.
NCBI ID   WP_410683298.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 973318..983839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO07_RS05050 (ACIO07_05055) - 976646..976912 (-) 267 WP_410683296.1 DUF5374 domain-containing protein -
  ACIO07_RS05055 (ACIO07_05060) - 976931..977596 (-) 666 WP_110480075.1 DUF2572 family protein -
  ACIO07_RS05060 (ACIO07_05065) - 977598..978317 (-) 720 WP_410683297.1 hypothetical protein -
  ACIO07_RS05065 (ACIO07_05070) comN 978318..978839 (-) 522 WP_410683298.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO07_RS05085 (ACIO07_05090) pal 979479..979931 (-) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  ACIO07_RS05090 (ACIO07_05095) tolB 979942..981231 (-) 1290 WP_410681049.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO07_RS05095 (ACIO07_05100) tolA 981283..982443 (-) 1161 WP_410683299.1 cell envelope integrity protein TolA -
  ACIO07_RS05100 (ACIO07_05105) tolR 982460..982882 (-) 423 WP_046098639.1 colicin uptake protein TolR -
  ACIO07_RS05105 (ACIO07_05110) tolQ 982934..983617 (-) 684 WP_046098640.1 protein TolQ -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20091.58 Da        Isoelectric Point: 8.4767

>NTDB_id=1070910 ACIO07_RS05065 WP_410683298.1 978318..978839(-) (comN) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEVVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLSKKWCISA
QIKQDKICNCLQPQYCSNELMVNIYTPMFPQETMIISKNYYPKEMARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKEISSLSACGDK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1070910 ACIO07_RS05065 WP_410683298.1 978318..978839(-) (comN) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCACTGCC
AATTTGGCAACAAAATCATAATGAAGTGGTGCTTGAAAAAGAGCAGCATAGGCTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAGTAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTACAGCCCCAATATTGTTCCAATGAATTAATGGTTAATATTTATACGCC
GATGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATGGCAAGACTGAGTGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCAGGAGATAAACGAACGCTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGAGATCTCTTCTTTGAGTGCTTGTGGAGATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

51.786

97.11

0.503

Multiple sequence alignment