Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   B6116_RS06535 Genome accession   NZ_CP007667
Coordinates   1259674..1260654 (+) Length   326 a.a.
NCBI ID   WP_047957333.1    Uniprot ID   -
Organism   Neisseria meningitidis strain B6116/77     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1254674..1265654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B6116_RS06515 (B6116_01226) - 1255903..1256490 (-) 588 WP_002220670.1 superoxide dismutase -
  B6116_RS06520 (B6116_01227) dnaB 1256653..1258059 (+) 1407 WP_002227431.1 replicative DNA helicase -
  B6116_RS06525 (B6116_01228) pilH 1258368..1259033 (+) 666 WP_047957332.1 GspH/FimT family pseudopilin Machinery gene
  B6116_RS06530 (B6116_01229) pilV 1259066..1259677 (+) 612 WP_047957366.1 type IV pilus modification protein PilV Regulator
  B6116_RS06535 (B6116_01230) pilJ 1259674..1260654 (+) 981 WP_047957333.1 PilW family protein Machinery gene
  B6116_RS06540 (B6116_01231) pilK 1260633..1261226 (+) 594 WP_047957334.1 pilus assembly PilX family protein Machinery gene
  B6116_RS06545 (B6116_01232) pilX 1261231..1261704 (+) 474 WP_193376947.1 PilX family type IV pilin Machinery gene
  B6116_RS06555 (B6116_01233) - 1264804..1265232 (-) 429 Protein_1237 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35788.68 Da        Isoelectric Point: 8.9621

>NTDB_id=107052 B6116_RS06535 WP_047957333.1 1259674..1260654(+) (pilJ) [Neisseria meningitidis strain B6116/77]
MKRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAAQQDLRNAATLIVRDARMAGGFG
CFNMSEHTKDDIIVDPSKQTQATPTKPGAKQENPLFSLKRSDMDKQLIPVAESADIQYPGFTQVGKALVFQYGIDDLDAS
AETVVVSSCSKIAKPGKKISTLQEAKSTLQITNDDKQNGNITRQRHQVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLA
KKIRRMKVRYIYVSDCPEDDDAGKEEKFKYTDTFDSSTNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNV
CANRTL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=107052 B6116_RS06535 WP_047957333.1 1259674..1260654(+) (pilJ) [Neisseria meningitidis strain B6116/77]
ATGAAACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCAGGGGGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTATTGTTGATCCAAGTAAGCAAACTCAAGCTACCCCTACAAAACC
CGGTGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGACATGGATAAACAACTGATTCCCGTTGCTGAATCCG
CAGATATTCAATATCCGGGTTTTACCCAGGTTGGTAAGGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGT
GCTGAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGCAAGAAAATATCTACCTTGCAAGAAGCAAAGAG
TACATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAGACATCAGGTCAACGCCTATGCGGTCG
GCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCG
AAAAAGATTAGACGTATGAAAGTGCGGTATATCTATGTTTCCGACTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAAA
ATTCAAATATACGGATACATTCGACAGCTCCACAAATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTA
CTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTA
TGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

74.164

100

0.748

Multiple sequence alignment