Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ACIQTD_RS10900 Genome accession   NZ_CP173185
Coordinates   2241754..2242692 (-) Length   312 a.a.
NCBI ID   WP_017865095.1    Uniprot ID   A0AAE4NRQ1
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2236754..2247692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS10875 frr 2236872..2237429 (-) 558 WP_004254618.1 ribosome recycling factor -
  ACIQTD_RS10880 pyrH 2237641..2238357 (-) 717 WP_021464089.1 UMP kinase -
  ACIQTD_RS10885 - 2238442..2238894 (-) 453 WP_270250250.1 hypothetical protein -
  ACIQTD_RS10890 - 2239028..2240215 (-) 1188 WP_058217400.1 acetate kinase -
  ACIQTD_RS10895 - 2240372..2241559 (-) 1188 WP_004254593.1 acetate kinase -
  ACIQTD_RS10900 comYH 2241754..2242692 (-) 939 WP_017865095.1 class I SAM-dependent methyltransferase Machinery gene
  ACIQTD_RS10905 - 2242780..2243031 (-) 252 WP_004254583.1 DUF3165 family protein -
  ACIQTD_RS10910 typA 2243132..2244964 (-) 1833 WP_025016832.1 translational GTPase TypA -
  ACIQTD_RS10915 - 2245152..2245610 (-) 459 WP_058217401.1 hypothetical protein -
  ACIQTD_RS10920 - 2245767..2246393 (-) 627 WP_017865097.1 ABC transporter ATP-binding protein -
  ACIQTD_RS10925 - 2246394..2247329 (-) 936 WP_270250245.1 DUF1430 domain-containing protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34750.90 Da        Isoelectric Point: 4.3717

>NTDB_id=1070512 ACIQTD_RS10900 WP_017865095.1 2241754..2242692(-) (comYH) [Lactococcus lactis subsp. lactis strain MGEL24009]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAALLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPGDVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=1070512 ACIQTD_RS10900 WP_017865095.1 2241754..2242692(-) (comYH) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTATTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTCTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGATCTGGTATGGGTAATCTTGCTGAAACGCTTTTAGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGGAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment