Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ACIO6V_RS07635 Genome accession   NZ_CP173167
Coordinates   1489226..1490062 (-) Length   278 a.a.
NCBI ID   WP_035447421.1    Uniprot ID   A0AAJ6JVQ3
Organism   Ligilactobacillus animalis strain D27     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1484226..1495062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO6V_RS07615 (ACIO6V_07615) - 1485161..1485532 (+) 372 WP_035447416.1 DUF4828 domain-containing protein -
  ACIO6V_RS07620 (ACIO6V_07620) - 1485610..1486284 (-) 675 WP_302450834.1 ABC transporter ATP-binding protein -
  ACIO6V_RS07625 (ACIO6V_07625) - 1486413..1487288 (-) 876 WP_035447418.1 CPBP family intramembrane glutamic endopeptidase -
  ACIO6V_RS07630 (ACIO6V_07630) - 1487369..1489039 (-) 1671 WP_404387645.1 IS1182 family transposase -
  ACIO6V_RS07635 (ACIO6V_07635) endA 1489226..1490062 (-) 837 WP_035447421.1 DNA/RNA non-specific endonuclease Machinery gene
  ACIO6V_RS07640 (ACIO6V_07640) asnA 1490122..1491129 (-) 1008 WP_035447424.1 aspartate--ammonia ligase -
  ACIO6V_RS07645 (ACIO6V_07645) - 1491318..1491965 (+) 648 WP_278506098.1 nitroreductase -
  ACIO6V_RS07650 (ACIO6V_07650) - 1492021..1492320 (-) 300 WP_278506100.1 GNAT family N-acetyltransferase -
  ACIO6V_RS07655 (ACIO6V_07655) - 1492514..1492876 (+) 363 WP_035447434.1 iron chaperone -
  ACIO6V_RS07660 (ACIO6V_07660) - 1493692..1493958 (-) 267 WP_005922582.1 hypothetical protein -
  ACIO6V_RS07665 (ACIO6V_07665) - 1494052..1494219 (-) 168 WP_143452063.1 M20 family metallopeptidase -

Sequence

Protein


Download         Length: 278 a.a.        Molecular weight: 30305.97 Da        Isoelectric Point: 10.5647

>NTDB_id=1070380 ACIO6V_RS07635 WP_035447421.1 1489226..1490062(-) (endA) [Ligilactobacillus animalis strain D27]
MKFKKILTGFAAALMLSGAIGAPVTAKATTHYGGWRTHQKNSSSGSGELKKSTPSQQLAQTVLTPDVVKQLGGEQNLKWN
NSGAFIVNNNKADLKAKVSSAPYATNEVDSLKRPTVANALLNRTTRQYKNRHQTNNGSTKWKPQGFKQLTNLSGAYNHAY
DRGHLLGYALVGNIRGFDASESNPKNIATQTAWANEANAKYSTGQNYYESLVRKALDRNKTVRYRVTNIYSGNNLVPAGA
HLEAKSSDGSLEYNVFIPNVQKGLKIDYATGHATKVNN

Nucleotide


Download         Length: 837 bp        

>NTDB_id=1070380 ACIO6V_RS07635 WP_035447421.1 1489226..1490062(-) (endA) [Ligilactobacillus animalis strain D27]
ATGAAGTTCAAAAAAATACTGACCGGATTTGCGGCAGCTTTGATGCTCAGTGGTGCGATCGGGGCACCGGTAACGGCCAA
AGCAACTACTCACTATGGTGGCTGGCGTACACATCAAAAAAATAGCTCGAGTGGCTCGGGTGAACTAAAAAAGAGCACCC
CATCACAACAATTAGCCCAAACAGTTTTGACACCTGATGTTGTTAAACAATTGGGCGGTGAGCAAAATCTCAAATGGAAC
AACAGTGGGGCTTTTATCGTTAATAACAACAAGGCAGATCTAAAAGCTAAGGTTTCTAGTGCACCTTATGCAACAAATGA
AGTCGATAGCTTGAAACGTCCGACGGTGGCAAACGCCCTTTTGAATAGGACAACGCGTCAATACAAGAATCGCCACCAAA
CTAATAATGGTTCGACTAAATGGAAACCACAGGGCTTTAAGCAACTCACTAACTTAAGTGGCGCCTACAACCATGCTTAT
GATCGCGGTCACTTACTAGGCTATGCTTTAGTTGGAAATATTCGTGGTTTTGATGCGAGTGAGAGCAATCCTAAAAATAT
TGCGACTCAAACTGCTTGGGCTAATGAAGCTAATGCAAAGTATTCAACAGGCCAAAATTATTACGAAAGTCTTGTTCGAA
AAGCCTTGGATCGTAATAAGACTGTCCGTTATCGTGTGACAAATATCTATAGTGGTAATAATTTAGTCCCAGCAGGAGCT
CACTTGGAAGCCAAATCAAGTGATGGTTCGTTGGAATATAATGTTTTTATCCCTAATGTTCAAAAGGGCTTAAAGATCGA
CTATGCTACTGGTCATGCGACAAAAGTGAACAACTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(83-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.889

80.935

0.525
  endA Streptococcus pneumoniae D39

64.889

80.935

0.525
  endA Streptococcus pneumoniae R6

64.889

80.935

0.525
  endA Streptococcus pneumoniae TIGR4

64.889

80.935

0.525

Multiple sequence alignment