Detailed information NTG1070111

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ACIGXT_RS08185
• Genome accession: NZ_CP173038
• Coordinates: 1611532..1612311 (+)
• Length: 259 a.a.
• NCBI ID: WP_003154263.1
• Uniprot ID: I2C545
• Organism: Bacillus velezensis strain Shannan.BV80-12
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1606532..1617311

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACIGXT_RS08165 (ACIGXT_08165)	trmFO	1607219..1608526 (+)	1308	WP_003154273.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ACIGXT_RS08170 (ACIGXT_08170)	xerC	1608596..1609513 (+)	918	WP_043867088.1	tyrosine recombinase XerC	-
ACIGXT_RS08175 (ACIGXT_08175)	hslV	1609529..1610074 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ACIGXT_RS08180 (ACIGXT_08180)	hslU	1610091..1611494 (+)	1404	WP_014305002.1	HslU--HslV peptidase ATPase subunit	-
ACIGXT_RS08185 (ACIGXT_08185)	codY	1611532..1612311 (+)	780	WP_003154263.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ACIGXT_RS08190 (ACIGXT_08190)	flgB	1612665..1613054 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ACIGXT_RS08195 (ACIGXT_08195)	flgC	1613054..1613506 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ACIGXT_RS08200 (ACIGXT_08200)	fliE	1613517..1613837 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
ACIGXT_RS08205 (ACIGXT_08205)	fliF	1613880..1615490 (+)	1611	WP_003154257.1	flagellar basal-body MS-ring/collar protein FliF	-
ACIGXT_RS08210 (ACIGXT_08210)	fliG	1615503..1616519 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ACIGXT_RS08215 (ACIGXT_08215)	fliH	1616512..1617267 (+)	756	WP_003154255.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29056.24 Da
• Isoelectric Point: 4.6017

>NTDB_id=1070111 ACIGXT_RS08185 WP_003154263.1 1611532..1612311(+) (codY) [Bacillus velezensis strain Shannan.BV80-12]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1070111 ACIGXT_RS08185 WP_003154263.1 1611532..1612311(+) (codY) [Bacillus velezensis strain Shannan.BV80-12]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: I2C545

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.228	100	0.992
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471