Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACF2JY_RS11810 Genome accession   NZ_CP172966
Coordinates   2289277..2290056 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain cel     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2284277..2295056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS11780 (ACF2JY_11780) fliH 2284295..2285047 (-) 753 WP_038430009.1 flagellar assembly protein FliH -
  ACF2JY_RS11785 (ACF2JY_11785) fliG 2285040..2286056 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ACF2JY_RS11790 (ACF2JY_11790) fliF 2286069..2287679 (-) 1611 WP_046381024.1 flagellar basal-body MS-ring/collar protein FliF -
  ACF2JY_RS11795 (ACF2JY_11795) fliE 2287725..2288045 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ACF2JY_RS11800 (ACF2JY_11800) flgC 2288056..2288508 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  ACF2JY_RS11805 (ACF2JY_11805) flgB 2288508..2288897 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ACF2JY_RS11810 (ACF2JY_11810) codY 2289277..2290056 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACF2JY_RS11815 (ACF2JY_11815) hslU 2290096..2291499 (-) 1404 WP_046381023.1 HslU--HslV peptidase ATPase subunit -
  ACF2JY_RS11820 (ACF2JY_11820) clpQ 2291516..2292061 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ACF2JY_RS11825 (ACF2JY_11825) xerC 2292074..2292988 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  ACF2JY_RS11830 (ACF2JY_11830) trmFO 2293056..2294363 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1069713 ACF2JY_RS11810 WP_003220850.1 2289277..2290056(-) (codY) [Bacillus subtilis strain cel]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1069713 ACF2JY_RS11810 WP_003220850.1 2289277..2290056(-) (codY) [Bacillus subtilis strain cel]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTTAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment