Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AADG46_RS11300 Genome accession   NZ_AP028804
Coordinates   2483923..2484783 (+) Length   286 a.a.
NCBI ID   WP_080387086.1    Uniprot ID   -
Organism   Vibrio cholerae strain VN152     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2478923..2489783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS11280 (VNVC001_21440) greB 2479454..2479936 (-) 483 WP_000850494.1 transcription elongation factor GreB -
  AADG46_RS11285 (VNVC001_21450) - 2480179..2482500 (+) 2322 WP_032477691.1 Tex family protein -
  AADG46_RS11290 (VNVC001_21460) - 2482595..2483065 (-) 471 WP_000961393.1 hypothetical protein -
  AADG46_RS11295 (VNVC001_21470) bioH 2483226..2483987 (-) 762 WP_032469467.1 pimeloyl-ACP methyl ester esterase BioH -
  AADG46_RS11300 comF 2483923..2484783 (+) 861 WP_080387086.1 ComF family protein Machinery gene
  AADG46_RS11305 (VNVC001_21490) nfuA 2484871..2485458 (+) 588 WP_000070178.1 Fe-S biogenesis protein NfuA -
  AADG46_RS11310 (VNVC001_21500) nudE 2485597..2486145 (+) 549 WP_000095812.1 ADP compounds hydrolase NudE -
  AADG46_RS11315 (VNVC001_21510) cysQ 2486168..2486995 (+) 828 WP_000106799.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AADG46_RS11320 (VNVC001_21520) - 2487047..2487805 (-) 759 WP_267777474.1 type II secretion system protein N -
  AADG46_RS11325 (VNVC001_21530) gspM 2487807..2488304 (-) 498 WP_000661339.1 type II secretion system protein GspM -
  AADG46_RS11330 (VNVC001_21540) gspL 2488314..2489525 (-) 1212 WP_176398512.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32532.45 Da        Isoelectric Point: 8.1655

>NTDB_id=106928 AADG46_RS11300 WP_080387086.1 2483923..2484783(+) (comF) [Vibrio cholerae strain VN152]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYPDSWLAMLTHWLRKTTAPLLTLECHLCRLALDTNSP
FGVCSACQAWLEHGYRCARCGLPTLTSVDQCGQCLGQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INQPAPLLCSVPLHWRRRWQRGFNQSDLLARELANVLNIEYDHQLFARRRATPHQQGLSKAQRIHNLRDAFVLNHPPNQP
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSHG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=106928 AADG46_RS11300 WP_080387086.1 2483923..2484783(+) (comF) [Vibrio cholerae strain VN152]
ATGCCCCAGCCGTGTACCAATACCAGATCTTGCCCTTGTCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCCCGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCACTGCTGACTCTAGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCACGCTGCGGTTTACCGACTCTTACCTC
TGTTGATCAGTGCGGGCAGTGTTTGGGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGCTTCCCAC
TCAGTGATGCGGTACATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCGCGCTTGGCTAAGCTACTCGCCACCCAG
ATTAACCAGCCAGCCCCGTTGCTGTGCAGTGTACCGCTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGTGAATTAGCCAATGTGCTGAACATTGAATATGACCACCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGGCTCAGCAAGGCGCAGCGAATCCACAACCTACGTGATGCGTTTGTGCTGAATCATCCGCCAAACCAACCA
CATGTTGCGATTGTGGACGATGTGGTGACCACAGGCAGTACGATCCGACATTTATGCGATTTACTGCTTGATGTCGGTGT
GCAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCCACGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

98.252

100

0.983
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment