Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ACHGMI_RS10305 Genome accession   NZ_CP172417
Coordinates   1902934..1903713 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain AKPS2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1897934..1908713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS10285 trmFO 1898627..1899934 (+) 1308 WP_017694866.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ACHGMI_RS10290 xerC 1900002..1900916 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  ACHGMI_RS10295 clpQ 1900929..1901474 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ACHGMI_RS10300 hslU 1901491..1902894 (+) 1404 WP_017694867.1 HslU--HslV peptidase ATPase subunit -
  ACHGMI_RS10305 codY 1902934..1903713 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ACHGMI_RS10310 flgB 1904093..1904482 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ACHGMI_RS10315 flgC 1904482..1904934 (+) 453 WP_017694868.1 flagellar basal body rod protein FlgC -
  ACHGMI_RS10320 fliE 1904945..1905265 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ACHGMI_RS10325 fliF 1905311..1906921 (+) 1611 WP_017694869.1 flagellar basal-body MS-ring/collar protein FliF -
  ACHGMI_RS10330 fliG 1906934..1907950 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ACHGMI_RS10335 fliH 1907943..1908695 (+) 753 WP_026113606.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=1067580 ACHGMI_RS10305 WP_003220850.1 1902934..1903713(+) (codY) [Bacillus subtilis strain AKPS2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=1067580 ACHGMI_RS10305 WP_003220850.1 1902934..1903713(+) (codY) [Bacillus subtilis strain AKPS2]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAGAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment