Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   NSU12_RS11975 Genome accession   NZ_CP172407
Coordinates   2436292..2438688 (-) Length   798 a.a.
NCBI ID   WP_343126740.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0985     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2431292..2443688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU12_RS11955 (NSU12_11955) - 2431384..2431653 (-) 270 WP_034771279.1 IreB family regulatory phosphoprotein -
  NSU12_RS11960 (NSU12_11960) alaS 2431877..2434507 (-) 2631 WP_343126739.1 alanine--tRNA ligase -
  NSU12_RS11965 (NSU12_11965) - 2434882..2435949 (-) 1068 WP_041903925.1 AI-2E family transporter -
  NSU12_RS11970 (NSU12_11970) - 2435995..2436189 (-) 195 WP_034771285.1 hypothetical protein -
  NSU12_RS11975 (NSU12_11975) recD2 2436292..2438688 (-) 2397 WP_343126740.1 ATP-dependent RecD-like DNA helicase Machinery gene
  NSU12_RS11980 (NSU12_11980) mnmA 2438973..2440097 (-) 1125 WP_343126741.1 tRNA 2-thiouridine(34) synthase MnmA -
  NSU12_RS11985 (NSU12_11985) - 2440109..2441254 (-) 1146 WP_251241445.1 cysteine desulfurase family protein -
  NSU12_RS11990 (NSU12_11990) cymR 2441321..2441743 (-) 423 WP_041846217.1 cysteine metabolism transcriptional regulator CymR -
  NSU12_RS11995 (NSU12_11995) - 2441882..2442532 (-) 651 WP_034771299.1 YitT family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90564.61 Da        Isoelectric Point: 5.2387

>NTDB_id=1067502 NSU12_RS11975 WP_343126740.1 2436292..2438688(-) (recD2) [Caldifermentibacillus hisashii strain FSL W8-0985]
MQQEERYIKGRPIVTIFHNEQNLYTVLRIRVDESNEAGVNKDAVVTGYFPRLYEEETYIFYGKFTDHPKYGPQFQVDHFR
KDLPKTKQGVVQYLSSELFKGIGKKTAENIVDVLGENAIERIMKQPSLLDTVPKLAADKAKLLHEKLIEYQGLENIMVGL
NQYGFGPQLSMRIYQTYKEHTLEIVENNPYKLVEDIEGIGFGRADELGFKLGMKGNHPDRVKAGCLYTLETDCIQEGHCY
LEKKTFIPAVKKLLESNQPVEIFPEDIEHELLKLEEEGKIVIDEERVFLPSIFYSEKGLVTNIKRILAQKEFEDGFPESE
FLLALGSLEERLGIQYAPSQREAIQTALSSPMLILTGGPGTGKTTVIKGIVELYGELHGCSLDPKDYKKDEVFPFVLAAP
TGRAAKRMAESTGLPAVTIHRLLGWNGTETFDYNEDNPIEGKIVIIDEMSMVDIWLAHHLFKALPAHVQVILVGDEDQLP
SVGPGQVLKDLLASERIPTVRLTDIYRQESGSSIIQLAHAIKNGTIPEDLRQQQKDRSFISCRTTQVADVVKQVVGHAIN
KGYTPKDIQVLAPMYRGPAGIDELNLLLQEILNGTNKEKRRELNFGDHTYRVGDKVLQLINQPDKNIFNGDIGEIVAIFY
AKETEEKVDQLVVSFDGNEVTYPRQDLHQITLAYCCSIHKSQGSEFPIVILPIVRGYHRMLRRNLIYTAITRSKEKLILC
GEEDAFRTAVYRTDDNMRNTTLKKRLLQEINGTHTPDIGVVKEDMSYEERLMNTDPMVGMENISPYDFMIEDRAEYLS

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=1067502 NSU12_RS11975 WP_343126740.1 2436292..2438688(-) (recD2) [Caldifermentibacillus hisashii strain FSL W8-0985]
ATGCAACAAGAAGAACGTTATATTAAGGGGCGACCGATCGTCACCATTTTTCACAATGAACAAAATTTATATACCGTTCT
TCGGATTCGTGTCGATGAATCAAATGAGGCTGGTGTAAACAAAGATGCGGTTGTCACCGGTTATTTCCCCCGTCTGTATG
AAGAAGAAACATATATTTTTTACGGAAAGTTTACGGATCATCCAAAATATGGTCCACAATTTCAAGTTGACCATTTTCGA
AAAGATCTGCCAAAGACAAAACAAGGTGTTGTTCAATATTTATCAAGTGAACTTTTTAAAGGAATAGGAAAGAAAACGGC
CGAAAATATTGTGGACGTGCTGGGTGAAAATGCTATCGAACGCATTATGAAACAGCCGTCTTTATTGGACACGGTACCGA
AATTGGCTGCTGATAAAGCAAAATTGTTACATGAAAAATTAATAGAGTATCAAGGGTTAGAAAATATTATGGTCGGGTTG
AATCAATACGGATTCGGTCCACAGCTGTCTATGCGAATCTATCAAACATATAAAGAACATACACTGGAAATCGTCGAAAA
TAACCCGTATAAACTTGTGGAAGATATTGAAGGAATTGGCTTTGGTCGGGCAGATGAATTAGGCTTTAAACTCGGCATGA
AAGGAAATCATCCGGATCGGGTTAAGGCCGGTTGTTTATACACATTAGAAACAGATTGTATTCAAGAAGGTCATTGTTAT
TTGGAAAAGAAAACTTTCATTCCGGCTGTTAAAAAGTTGCTGGAATCTAACCAGCCGGTGGAAATTTTTCCGGAAGATAT
TGAGCATGAACTTTTGAAACTGGAGGAAGAAGGAAAGATCGTCATCGATGAGGAACGTGTATTTCTACCTTCCATTTTTT
ATTCGGAAAAAGGTTTGGTAACGAATATAAAAAGAATCTTGGCTCAAAAAGAATTTGAAGACGGCTTTCCGGAATCGGAA
TTTCTCCTTGCATTAGGTAGTTTAGAGGAACGGCTTGGTATTCAATATGCTCCATCACAAAGGGAAGCAATTCAAACCGC
ACTCTCCAGTCCAATGTTAATTTTAACCGGCGGACCGGGAACGGGAAAAACGACGGTAATTAAAGGAATCGTTGAACTGT
ATGGAGAATTGCACGGTTGCAGTTTGGATCCAAAAGACTATAAAAAGGATGAAGTGTTTCCGTTTGTGTTGGCTGCTCCA
ACCGGTCGGGCCGCAAAACGGATGGCGGAATCAACCGGTTTACCGGCAGTAACGATTCATCGATTACTCGGATGGAATGG
AACCGAAACCTTTGATTATAACGAAGATAATCCGATTGAAGGGAAGATTGTTATCATTGATGAGATGTCGATGGTTGACA
TTTGGCTTGCCCATCATTTATTTAAAGCTTTGCCTGCGCATGTGCAAGTTATTTTGGTCGGTGATGAAGATCAATTACCT
TCCGTTGGCCCGGGGCAAGTTTTGAAAGATTTATTAGCCTCAGAACGAATTCCGACCGTTCGTTTGACGGATATTTATCG
ACAAGAAAGCGGCTCATCCATTATTCAGCTTGCTCATGCCATAAAAAACGGGACGATACCGGAAGATTTAAGACAGCAAC
AAAAGGATCGTTCATTCATTTCTTGCCGTACGACACAAGTTGCTGATGTCGTAAAGCAGGTCGTCGGACATGCAATCAAT
AAAGGTTATACACCTAAAGATATTCAAGTTTTGGCACCGATGTATCGGGGGCCGGCCGGAATTGATGAGCTGAATTTACT
TCTCCAAGAAATATTGAATGGAACGAACAAGGAAAAGCGAAGGGAATTAAACTTTGGCGACCATACTTACCGGGTTGGCG
ATAAAGTTTTGCAATTAATCAATCAACCGGATAAAAATATTTTTAACGGTGATATCGGTGAAATTGTAGCTATCTTTTAT
GCAAAAGAGACAGAGGAAAAAGTTGATCAACTGGTCGTTTCGTTTGACGGTAATGAGGTTACTTACCCGAGACAGGATTT
ACATCAAATTACCCTTGCCTATTGCTGCAGTATTCACAAATCGCAAGGGAGCGAATTTCCGATTGTCATTCTACCGATTG
TCAGAGGCTATCACCGGATGTTACGGAGAAATCTTATTTATACGGCCATCACGCGGAGTAAAGAAAAATTAATTTTATGC
GGGGAAGAGGATGCCTTTCGAACCGCCGTTTATCGTACGGATGATAATATGAGGAACACGACGTTAAAGAAACGATTATT
GCAAGAAATAAACGGAACTCACACTCCGGATATCGGGGTAGTGAAAGAAGATATGTCTTATGAAGAACGATTAATGAATA
CGGATCCGATGGTTGGCATGGAGAATATTAGCCCGTATGATTTCATGATTGAAGATAGAGCGGAATATTTAAGTTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(336-543)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(150-240)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-720)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.791

99.373

0.614

Multiple sequence alignment