Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACHZDB_RS11325 Genome accession   NZ_CP172405
Coordinates   2481071..2481796 (-) Length   241 a.a.
NCBI ID   WP_399423988.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB503     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2476071..2486796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS11300 (ACHZDB_11300) - 2477227..2477718 (+) 492 WP_005430160.1 type II secretion system protein M -
  ACHZDB_RS11305 (ACHZDB_11305) - 2477720..2478481 (+) 762 WP_399423984.1 type II secretion system protein N -
  ACHZDB_RS11310 (ACHZDB_11310) cysQ 2478772..2479599 (-) 828 WP_005430183.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ACHZDB_RS11315 (ACHZDB_11315) nudE 2479647..2480213 (-) 567 WP_399423986.1 ADP compounds hydrolase NudE -
  ACHZDB_RS11320 (ACHZDB_11320) nfuA 2480389..2480973 (-) 585 WP_005430072.1 Fe-S biogenesis protein NfuA -
  ACHZDB_RS11325 (ACHZDB_11325) comF 2481071..2481796 (-) 726 WP_399423988.1 ComF family protein Machinery gene
  ACHZDB_RS11330 (ACHZDB_11330) bioH 2481881..2482645 (+) 765 WP_399423990.1 pimeloyl-ACP methyl ester esterase BioH -
  ACHZDB_RS11335 (ACHZDB_11335) - 2482781..2483245 (+) 465 WP_005430182.1 hypothetical protein -
  ACHZDB_RS11340 (ACHZDB_11340) - 2483370..2485691 (-) 2322 WP_399423992.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27648.82 Da        Isoelectric Point: 8.2981

>NTDB_id=1067455 ACHZDB_RS11325 WP_399423988.1 2481071..2481796(-) (comF) [Vibrio campbellii strain LB503]
MLSHQWQNIMHRVLGSQCGLCRFPMPHRQTPNLMRWCDSCFDHLTPIERCVRCGLKMTEKESQAATECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEVWHVGALTQLLAERVEQPAPVITSVPVHWQRFLKRGFNQSHILAKHLAHHLDVRYEN
KVFKRVKSVQSQRGNKKTSREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=1067455 ACHZDB_RS11325 WP_399423988.1 2481071..2481796(-) (comF) [Vibrio campbellii strain LB503]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTTGGCAGCCAATGTGGTTTGTGTCGATTTCCCATGCCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATTGAGCGCTGCGTACGTTGTG
GTTTAAAAATGACAGAAAAGGAATCACAAGCCGCCACAGAGTGTGGAGAGTGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTGGGTGATTATGACTTCCCGCTCTCTCAACAAGTACAGCGTTTTAAAGATCACGGCGAAGTCTGGCATGT
GGGCGCGCTCACTCAATTATTAGCAGAGCGAGTTGAGCAGCCTGCCCCAGTGATTACAAGTGTGCCCGTTCACTGGCAGC
GCTTCTTAAAACGAGGTTTCAACCAGAGCCACATCTTGGCCAAACACCTCGCCCATCATTTAGATGTGCGCTATGAAAAC
AAGGTATTTAAACGCGTCAAAAGCGTCCAATCACAACGAGGAAACAAAAAAACCAGTCGCGAGCAAAATTTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCGCCCGGTTCG
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

96.68

100

0.967
  comF Vibrio cholerae strain A1552

46.639

98.755

0.461

Multiple sequence alignment