Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6F1_RS07100 Genome accession   NZ_CP172397
Coordinates   1357297..1357812 (-) Length   171 a.a.
NCBI ID   WP_395941526.1    Uniprot ID   -
Organism   Campylobacter coli strain YH506     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1352297..1362812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6F1_RS07085 (ACH6F1_07075) - 1352409..1354226 (-) 1818 WP_395941522.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6F1_RS07090 (ACH6F1_07080) - 1354223..1356046 (-) 1824 WP_395941524.1 motility associated factor glycosyltransferase family protein -
  ACH6F1_RS07095 (ACH6F1_07085) - 1356056..1357297 (-) 1242 WP_395941525.1 DUF2920 family protein -
  ACH6F1_RS07100 (ACH6F1_07090) ctsG 1357297..1357812 (-) 516 WP_395941526.1 type II secretion system protein Machinery gene
  ACH6F1_RS07105 (ACH6F1_07095) tsaD 1357813..1358820 (-) 1008 WP_395941527.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6F1_RS07110 (ACH6F1_07100) - 1358817..1360211 (-) 1395 WP_395941528.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6F1_RS07115 (ACH6F1_07105) dxr 1360208..1361284 (-) 1077 WP_395941529.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6F1_RS07120 (ACH6F1_07110) - 1361281..1362006 (-) 726 WP_134237500.1 phosphatidate cytidylyltransferase -
  ACH6F1_RS07125 (ACH6F1_07115) - 1362015..1362353 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18748.64 Da        Isoelectric Point: 6.4693

>NTDB_id=1067311 ACH6F1_RS07100 WP_395941526.1 1357297..1357812(-) (ctsG) [Campylobacter coli strain YH506]
MKKAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFISSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1067311 ACH6F1_RS07100 WP_395941526.1 1357297..1357812(-) (ctsG) [Campylobacter coli strain YH506]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTATAAGCTCTTCTAGTAACAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918

Multiple sequence alignment