Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FA_RS06840 Genome accession   NZ_CP172396
Coordinates   1321085..1321600 (-) Length   171 a.a.
NCBI ID   WP_395941203.1    Uniprot ID   -
Organism   Campylobacter coli strain YH505     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1316085..1326600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FA_RS06825 (ACH6FA_06825) - 1316169..1317992 (-) 1824 WP_395941200.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6FA_RS06830 (ACH6FA_06830) - 1317989..1319818 (-) 1830 WP_395941201.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6FA_RS06835 (ACH6FA_06835) - 1319829..1321085 (-) 1257 WP_395941202.1 DUF2920 family protein -
  ACH6FA_RS06840 (ACH6FA_06840) ctsG 1321085..1321600 (-) 516 WP_395941203.1 type II secretion system protein Machinery gene
  ACH6FA_RS06845 (ACH6FA_06845) tsaD 1321601..1322608 (-) 1008 WP_395941204.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FA_RS06850 (ACH6FA_06850) - 1322605..1323999 (-) 1395 WP_002806268.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FA_RS06855 (ACH6FA_06855) dxr 1323996..1325072 (-) 1077 WP_061474947.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FA_RS06860 (ACH6FA_06860) - 1325069..1325794 (-) 726 WP_072239456.1 phosphatidate cytidylyltransferase -
  ACH6FA_RS06865 (ACH6FA_06865) - 1325803..1326141 (-) 339 WP_057044860.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18713.53 Da        Isoelectric Point: 6.4665

>NTDB_id=1067288 ACH6FA_RS06840 WP_395941203.1 1321085..1321600(-) (ctsG) [Campylobacter coli strain YH505]
MKKAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1067288 ACH6FA_RS06840 WP_395941203.1 1321085..1321600(-) (ctsG) [Campylobacter coli strain YH505]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTGGCAAT
TTTAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

90.058

100

0.901

Multiple sequence alignment