Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6E9_RS07170 Genome accession   NZ_CP172392
Coordinates   1353099..1353614 (-) Length   171 a.a.
NCBI ID   WP_002780549.1    Uniprot ID   A0A3Z9GFK4
Organism   Campylobacter coli strain YH507     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1348099..1358614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6E9_RS07155 (ACH6E9_07160) - 1348197..1350014 (-) 1818 WP_395941731.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6E9_RS07160 (ACH6E9_07165) - 1350011..1351840 (-) 1830 WP_395941732.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6E9_RS07165 (ACH6E9_07170) - 1351851..1353099 (-) 1249 Protein_1389 DUF2920 family protein -
  ACH6E9_RS07170 (ACH6E9_07175) ctsG 1353099..1353614 (-) 516 WP_002780549.1 type II secretion system protein Machinery gene
  ACH6E9_RS07175 (ACH6E9_07180) tsaD 1353618..1354625 (-) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6E9_RS07180 (ACH6E9_07185) - 1354622..1356016 (-) 1395 WP_395941733.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6E9_RS07185 (ACH6E9_07190) dxr 1356013..1357089 (-) 1077 WP_002799194.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6E9_RS07190 (ACH6E9_07195) - 1357086..1357811 (-) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  ACH6E9_RS07195 (ACH6E9_07200) - 1357820..1358158 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18764.60 Da        Isoelectric Point: 6.4693

>NTDB_id=1067265 ACH6E9_RS07170 WP_002780549.1 1353099..1353614(-) (ctsG) [Campylobacter coli strain YH507]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1067265 ACH6E9_RS07170 WP_002780549.1 1353099..1353614(-) (ctsG) [Campylobacter coli strain YH507]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9GFK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.813

100

0.918

Multiple sequence alignment