Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FV_RS02145 Genome accession   NZ_CP172391
Coordinates   433106..433621 (+) Length   171 a.a.
NCBI ID   WP_057038166.1    Uniprot ID   -
Organism   Campylobacter coli strain YH508     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428106..438621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FV_RS02120 (ACH6FV_02120) - 428562..428900 (+) 339 WP_002777761.1 hypothetical protein -
  ACH6FV_RS02125 (ACH6FV_02125) - 428909..429634 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  ACH6FV_RS02130 (ACH6FV_02130) dxr 429631..430707 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FV_RS02135 (ACH6FV_02135) - 430704..432098 (+) 1395 WP_002822458.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FV_RS02140 (ACH6FV_02140) tsaD 432095..433102 (+) 1008 WP_002780547.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FV_RS02145 (ACH6FV_02145) ctsG 433106..433621 (+) 516 WP_057038166.1 type II secretion system protein Machinery gene
  ACH6FV_RS02150 (ACH6FV_02150) - 433621..434862 (+) 1242 WP_395941374.1 DUF2920 family protein -
  ACH6FV_RS02155 (ACH6FV_02155) - 434874..436697 (+) 1824 WP_395941375.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6FV_RS02160 (ACH6FV_02160) - 436694..438514 (+) 1821 WP_395941376.1 6-hydroxymethylpterin diphosphokinase MptE-like protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18790.68 Da        Isoelectric Point: 6.4693

>NTDB_id=1067236 ACH6FV_RS02145 WP_057038166.1 433106..433621(+) (ctsG) [Campylobacter coli strain YH508]
MKRAFTILELVFVIVILGILAAIALPKFSSIRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1067236 ACH6FV_RS02145 WP_057038166.1 433106..433621(+) (ctsG) [Campylobacter coli strain YH508]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTATTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.228

100

0.912

Multiple sequence alignment