Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6F0_RS02415 Genome accession   NZ_CP172390
Coordinates   462860..463375 (+) Length   171 a.a.
NCBI ID   WP_002805379.1    Uniprot ID   -
Organism   Campylobacter coli strain YH509     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457860..468375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6F0_RS02390 (ACH6F0_02390) - 458316..458654 (+) 339 WP_002777761.1 hypothetical protein -
  ACH6F0_RS02395 (ACH6F0_02395) - 458663..459388 (+) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  ACH6F0_RS02400 (ACH6F0_02400) dxr 459385..460461 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6F0_RS02405 (ACH6F0_02405) - 460458..461852 (+) 1395 WP_002797421.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6F0_RS02410 (ACH6F0_02410) tsaD 461849..462856 (+) 1008 WP_002785735.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6F0_RS02415 (ACH6F0_02415) ctsG 462860..463375 (+) 516 WP_002805379.1 type II secretion system protein Machinery gene
  ACH6F0_RS02420 (ACH6F0_02420) - 463375..464625 (+) 1251 WP_002817246.1 DUF2920 family protein -
  ACH6F0_RS02425 (ACH6F0_02425) - 464636..466459 (+) 1824 WP_052785743.1 motility associated factor glycosyltransferase family protein -
  ACH6F0_RS02430 (ACH6F0_02430) - 466456..468270 (+) 1815 WP_052785744.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18968.98 Da        Isoelectric Point: 8.4832

>NTDB_id=1067212 ACH6F0_RS02415 WP_002805379.1 462860..463375(+) (ctsG) [Campylobacter coli strain YH509]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLNN
FIGIKEVNFKVGEDKECIKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1067212 ACH6F0_RS02415 WP_002805379.1 462860..463375(+) (ctsG) [Campylobacter coli strain YH509]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTAACAAT
TTTATAGGCATAAAAGAAGTAAATTTTAAGGTCGGAGAGGATAAAGAGTGTATAAAACTGATTTTCATCGATAGAAATGA
TTTTGTACTGATGGGAATTTCTAGTAATGAAGCAAGCAAAAATGCCATAATCAATATAGCCAATAACCCCAAACAAGAAT
TTCAAAACTTAGATTTTACAAGCAATTCAAAAAATAAAGCTTGCGTGGCACTAAGTAAAAATGAGAATTTTAAAAATTTA
GCCAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

77.778

100

0.778

Multiple sequence alignment