Detailed information
Bioinformatically predicted
Overview
| Name | proC | Type | Machinery gene |
| Locus tag | ACH6FT_RS03620 | Genome accession | NZ_CP172387 |
| Coordinates | 716681..717418 (-) | Length | 245 a.a. |
| NCBI ID | WP_002787902.1 | Uniprot ID | A0A630BMP3 |
| Organism | Campylobacter coli strain YH510 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 717971..762410 | 716681..717418 | flank | 553 |
Gene organization within MGE regions
Location: 716681..762410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6FT_RS03620 (ACH6FT_03620) | proC | 716681..717418 (-) | 738 | WP_002787902.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| ACH6FT_RS03625 (ACH6FT_03625) | fliW | 717418..717807 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| ACH6FT_RS03630 (ACH6FT_03630) | - | 717971..718618 (+) | 648 | WP_002777091.1 | outer membrane protein assembly factor BamD | - |
| ACH6FT_RS03635 (ACH6FT_03635) | lon | 718634..721009 (+) | 2376 | WP_002777089.1 | endopeptidase La | - |
| ACH6FT_RS03640 (ACH6FT_03640) | rpsR | 721065..721325 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
| ACH6FT_RS03645 (ACH6FT_03645) | - | 721336..721884 (-) | 549 | WP_002777084.1 | single-stranded DNA-binding protein | - |
| ACH6FT_RS03650 (ACH6FT_03650) | rpsF | 721893..722270 (-) | 378 | WP_002777082.1 | 30S ribosomal protein S6 | - |
| ACH6FT_RS03655 (ACH6FT_03655) | - | 722549..723544 (+) | 996 | Protein_713 | MFS transporter | - |
| ACH6FT_RS03660 (ACH6FT_03660) | - | 724091..724720 (+) | 630 | WP_002784646.1 | S24 family peptidase | - |
| ACH6FT_RS03665 (ACH6FT_03665) | - | 724801..725121 (+) | 321 | WP_002784647.1 | hypothetical protein | - |
| ACH6FT_RS03670 (ACH6FT_03670) | - | 725131..725325 (+) | 195 | WP_002784648.1 | hypothetical protein | - |
| ACH6FT_RS03675 (ACH6FT_03675) | - | 725405..725692 (+) | 288 | WP_002784651.1 | hypothetical protein | - |
| ACH6FT_RS03680 (ACH6FT_03680) | - | 725720..726535 (-) | 816 | WP_214120803.1 | DNA adenine methylase | - |
| ACH6FT_RS03685 (ACH6FT_03685) | - | 726640..727128 (-) | 489 | WP_002791360.1 | phage virion morphogenesis protein | - |
| ACH6FT_RS03690 (ACH6FT_03690) | - | 727132..729471 (-) | 2340 | WP_214120802.1 | phage tail tape measure protein | - |
| ACH6FT_RS03695 (ACH6FT_03695) | - | 729513..729818 (+) | 306 | WP_002791365.1 | hypothetical protein | - |
| ACH6FT_RS03700 (ACH6FT_03700) | - | 729930..730169 (-) | 240 | WP_002791367.1 | phage tail assembly protein | - |
| ACH6FT_RS03705 (ACH6FT_03705) | - | 730274..730783 (-) | 510 | WP_002827105.1 | phage major tail tube protein | - |
| ACH6FT_RS03710 (ACH6FT_03710) | - | 730810..732003 (-) | 1194 | WP_087715726.1 | phage tail protein | - |
| ACH6FT_RS03715 (ACH6FT_03715) | - | 732014..733027 (-) | 1014 | WP_214120801.1 | hypothetical protein | - |
| ACH6FT_RS03720 (ACH6FT_03720) | - | 733024..733410 (-) | 387 | WP_002789987.1 | DUF1353 domain-containing protein | - |
| ACH6FT_RS03725 (ACH6FT_03725) | - | 733403..735160 (-) | 1758 | WP_002784666.1 | radical SAM/SPASM domain-containing protein | - |
| ACH6FT_RS03730 (ACH6FT_03730) | - | 735160..735795 (-) | 636 | WP_002784668.1 | hypothetical protein | - |
| ACH6FT_RS03735 (ACH6FT_03735) | - | 735805..736842 (-) | 1038 | WP_214120800.1 | phage tail protein | - |
| ACH6FT_RS03740 (ACH6FT_03740) | - | 736842..737462 (-) | 621 | WP_395940897.1 | phage tail protein I | - |
| ACH6FT_RS03745 (ACH6FT_03745) | - | 737551..738717 (-) | 1167 | WP_395941019.1 | baseplate J/gp47 family protein | - |
| ACH6FT_RS03750 (ACH6FT_03750) | - | 738714..739004 (-) | 291 | WP_218994322.1 | GPW/gp25 family protein | - |
| ACH6FT_RS03755 (ACH6FT_03760) | - | 739201..739833 (-) | 633 | WP_071616331.1 | phage baseplate assembly protein V | - |
| ACH6FT_RS03760 (ACH6FT_03765) | - | 739833..740147 (-) | 315 | WP_002784492.1 | phage holin family protein | - |
| ACH6FT_RS03765 (ACH6FT_03770) | - | 740259..740507 (-) | 249 | WP_002790263.1 | hypothetical protein | - |
| ACH6FT_RS03770 (ACH6FT_03775) | - | 740504..740845 (-) | 342 | WP_002854893.1 | hypothetical protein | - |
| ACH6FT_RS03775 (ACH6FT_03780) | - | 740856..741245 (-) | 390 | WP_002784499.1 | D-Ala-D-Ala carboxypeptidase family metallohydrolase | - |
| ACH6FT_RS03780 (ACH6FT_03785) | - | 741393..741827 (+) | 435 | WP_002784501.1 | hypothetical protein | - |
| ACH6FT_RS03785 (ACH6FT_03790) | - | 741829..742644 (+) | 816 | WP_002876306.1 | phage protease | - |
| ACH6FT_RS03790 (ACH6FT_03795) | - | 742647..743174 (+) | 528 | WP_002875114.1 | hypothetical protein | - |
| ACH6FT_RS03795 (ACH6FT_03800) | - | 743177..744154 (+) | 978 | WP_002876307.1 | major capsid protein | - |
| ACH6FT_RS03800 (ACH6FT_03805) | - | 744270..744728 (+) | 459 | WP_002855185.1 | phage protein Gp36 family protein | - |
| ACH6FT_RS03805 (ACH6FT_03810) | - | 744721..745320 (+) | 600 | WP_002803360.1 | DUF1804 family protein | - |
| ACH6FT_RS03810 (ACH6FT_03815) | terL | 745320..746990 (+) | 1671 | WP_395941027.1 | phage terminase large subunit | - |
| ACH6FT_RS03815 (ACH6FT_03820) | - | 747000..748370 (+) | 1371 | WP_395940892.1 | DUF935 family protein | - |
| ACH6FT_RS03820 (ACH6FT_03825) | - | 748373..749608 (+) | 1236 | WP_395940891.1 | phage minor head protein | - |
| ACH6FT_RS03825 (ACH6FT_03830) | - | 749734..750108 (+) | 375 | WP_002784519.1 | phage tail protein | - |
| ACH6FT_RS03830 (ACH6FT_03835) | - | 750101..750292 (+) | 192 | WP_002784520.1 | tail protein X | - |
| ACH6FT_RS03835 (ACH6FT_03840) | - | 750286..751263 (+) | 978 | WP_395940890.1 | phage late control D family protein | - |
| ACH6FT_RS03840 (ACH6FT_03845) | - | 751260..751544 (-) | 285 | WP_002784523.1 | Mor transcription activator family protein | - |
| ACH6FT_RS03845 (ACH6FT_03850) | - | 751638..752240 (+) | 603 | WP_002795453.1 | endonuclease | - |
| ACH6FT_RS03850 (ACH6FT_03855) | - | 752232..752483 (-) | 252 | WP_087715732.1 | hypothetical protein | - |
| ACH6FT_RS03855 (ACH6FT_03860) | - | 752555..753004 (-) | 450 | WP_002841916.1 | phage protein GemA/Gp16 family protein | - |
| ACH6FT_RS03860 (ACH6FT_03865) | - | 753001..753693 (-) | 693 | WP_038401749.1 | hypothetical protein | - |
| ACH6FT_RS03865 (ACH6FT_03870) | - | 753693..753962 (-) | 270 | WP_002784531.1 | hypothetical protein | - |
| ACH6FT_RS03870 (ACH6FT_03875) | - | 753959..754921 (-) | 963 | WP_167844333.1 | hypothetical protein | - |
| ACH6FT_RS03875 (ACH6FT_03880) | - | 755030..755416 (-) | 387 | WP_002791413.1 | YopX family protein | - |
| ACH6FT_RS03880 (ACH6FT_03885) | - | 755413..755685 (-) | 273 | WP_002791414.1 | hypothetical protein | - |
| ACH6FT_RS03885 (ACH6FT_03890) | - | 755749..755928 (-) | 180 | WP_002791416.1 | hypothetical protein | - |
| ACH6FT_RS03890 (ACH6FT_03895) | - | 755925..756410 (-) | 486 | WP_052790181.1 | host-nuclease inhibitor Gam family protein | - |
| ACH6FT_RS03895 (ACH6FT_03900) | - | 756411..756608 (-) | 198 | WP_395940889.1 | hypothetical protein | - |
| ACH6FT_RS03900 (ACH6FT_03905) | - | 756605..756943 (-) | 339 | WP_002793915.1 | DUF4406 domain-containing protein | - |
| ACH6FT_RS03905 (ACH6FT_03910) | - | 757145..757330 (-) | 186 | WP_002784541.1 | hypothetical protein | - |
| ACH6FT_RS03910 (ACH6FT_03915) | - | 757327..757518 (-) | 192 | WP_002793918.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| ACH6FT_RS03915 (ACH6FT_03920) | - | 757522..758445 (-) | 924 | WP_002793919.1 | AAA family ATPase | - |
| ACH6FT_RS03920 (ACH6FT_03925) | - | 758616..760691 (-) | 2076 | WP_395941020.1 | DDE-type integrase/transposase/recombinase | - |
| ACH6FT_RS03925 (ACH6FT_03930) | - | 760688..760888 (-) | 201 | WP_002804142.1 | hypothetical protein | - |
| ACH6FT_RS03930 (ACH6FT_03935) | - | 761038..761712 (+) | 675 | WP_002804144.1 | LexA family transcriptional regulator | - |
| ACH6FT_RS03935 (ACH6FT_03940) | - | 761712..762410 (+) | 699 | WP_041016326.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 245 a.a. Molecular weight: 26783.17 Da Isoelectric Point: 9.3032
>NTDB_id=1067193 ACH6FT_RS03620 WP_002787902.1 716681..717418(-) (proC) [Campylobacter coli strain YH510]
MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEGFKTLLYKDFNIENKNIILAFKPYALESVAANLKGKA
KILISVLANTDFDKLKLIQAQNYARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
APAFLALVAESIANAGVYEGLSKDLSLNLTRSLFKSAAALLENEHPAIIKENICSPAGVTIKGIKVLEQKGIRGTFFEAL
NASAT
MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEGFKTLLYKDFNIENKNIILAFKPYALESVAANLKGKA
KILISVLANTDFDKLKLIQAQNYARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
APAFLALVAESIANAGVYEGLSKDLSLNLTRSLFKSAAALLENEHPAIIKENICSPAGVTIKGIKVLEQKGIRGTFFEAL
NASAT
Nucleotide
Download Length: 738 bp
>NTDB_id=1067193 ACH6FT_RS03620 WP_002787902.1 716681..717418(-) (proC) [Campylobacter coli strain YH510]
ATGAAAGCTGATTTATATATACTTGCTAATGGTGCGATGGCGCAAGCTTTGGCTTATGGATTAAAAGATTCTTATAATAT
CTATATAGTCGGTAGAAATTTAGAAAAGCTTCAAATTTTAGAAAAAGAAGGTTTTAAAACTTTACTCTATAAAGATTTTA
ATATAGAAAATAAAAATATTATCTTAGCTTTTAAACCTTATGCCTTAGAAAGTGTCGCAGCAAATTTAAAAGGCAAGGCA
AAAATTTTAATTTCAGTTTTAGCCAATACGGATTTTGATAAATTAAAACTTATCCAAGCCCAAAATTATGCAAGGATAAT
GCCAAATACAGCAGCTAAATATAAAGCTTCCACAACTCCTTATGTTTTAAAAAATTCAAATTTTAAAGATGAAGTCATAG
AAATTTTAAATACTTTTGGCAAAGCTTATGAGTTAAACGAAGAAAAACAAATGAATGCTGCCATGGCTATAAGCGGTTGC
GCTCCTGCTTTTTTAGCATTAGTAGCTGAAAGCATTGCTAATGCTGGCGTGTATGAAGGATTATCAAAAGATCTGAGTTT
AAATCTCACTCGTTCGCTTTTTAAAAGTGCTGCAGCCTTGCTAGAAAACGAGCACCCAGCCATCATTAAGGAAAATATCT
GCTCGCCTGCAGGTGTTACCATAAAAGGGATTAAAGTATTAGAGCAAAAAGGTATCCGTGGGACTTTTTTTGAGGCTCTT
AATGCTAGTGCAACATGA
ATGAAAGCTGATTTATATATACTTGCTAATGGTGCGATGGCGCAAGCTTTGGCTTATGGATTAAAAGATTCTTATAATAT
CTATATAGTCGGTAGAAATTTAGAAAAGCTTCAAATTTTAGAAAAAGAAGGTTTTAAAACTTTACTCTATAAAGATTTTA
ATATAGAAAATAAAAATATTATCTTAGCTTTTAAACCTTATGCCTTAGAAAGTGTCGCAGCAAATTTAAAAGGCAAGGCA
AAAATTTTAATTTCAGTTTTAGCCAATACGGATTTTGATAAATTAAAACTTATCCAAGCCCAAAATTATGCAAGGATAAT
GCCAAATACAGCAGCTAAATATAAAGCTTCCACAACTCCTTATGTTTTAAAAAATTCAAATTTTAAAGATGAAGTCATAG
AAATTTTAAATACTTTTGGCAAAGCTTATGAGTTAAACGAAGAAAAACAAATGAATGCTGCCATGGCTATAAGCGGTTGC
GCTCCTGCTTTTTTAGCATTAGTAGCTGAAAGCATTGCTAATGCTGGCGTGTATGAAGGATTATCAAAAGATCTGAGTTT
AAATCTCACTCGTTCGCTTTTTAAAAGTGCTGCAGCCTTGCTAGAAAACGAGCACCCAGCCATCATTAAGGAAAATATCT
GCTCGCCTGCAGGTGTTACCATAAAAGGGATTAAAGTATTAGAGCAAAAAGGTATCCGTGGGACTTTTTTTGAGGCTCTT
AATGCTAGTGCAACATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| proC | Campylobacter jejuni subsp. jejuni 81-176 |
80.417 |
97.959 |
0.788 |