Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FK_RS02085 Genome accession   NZ_CP172385
Coordinates   419068..419583 (+) Length   171 a.a.
NCBI ID   WP_002838045.1    Uniprot ID   -
Organism   Campylobacter coli strain YH511     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 414068..424583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FK_RS02060 (ACH6FK_02060) - 414524..414862 (+) 339 WP_002806264.1 hypothetical protein -
  ACH6FK_RS02065 (ACH6FK_02065) - 414871..415596 (+) 726 WP_002822456.1 phosphatidate cytidylyltransferase -
  ACH6FK_RS02070 (ACH6FK_02070) dxr 415593..416669 (+) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FK_RS02075 (ACH6FK_02075) - 416666..418060 (+) 1395 WP_002822458.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FK_RS02080 (ACH6FK_02080) tsaD 418057..419064 (+) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FK_RS02085 (ACH6FK_02085) ctsG 419068..419583 (+) 516 WP_002838045.1 type II secretion system protein Machinery gene
  ACH6FK_RS02090 (ACH6FK_02090) - 419583..420824 (+) 1242 WP_002838043.1 DUF2920 family protein -
  ACH6FK_RS02095 (ACH6FK_02095) - 420834..421673 (+) 840 Protein_405 6-hydroxymethylpterin diphosphokinase MptE-like protein -
  ACH6FK_RS02100 (ACH6FK_02100) - 421675..421770 (+) 96 Protein_406 hypothetical protein -
  ACH6FK_RS02110 (ACH6FK_02110) - 422441..423073 (-) 633 WP_002777778.1 membrane protein -
  ACH6FK_RS02115 (ACH6FK_02115) - 423239..424228 (-) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18693.49 Da        Isoelectric Point: 5.7789

>NTDB_id=1067159 ACH6FK_RS02085 WP_002838045.1 419068..419583(+) (ctsG) [Campylobacter coli strain YH511]
MKRAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1067159 ACH6FK_RS02085 WP_002838045.1 419068..419583(+) (ctsG) [Campylobacter coli strain YH511]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTGAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment