Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FQ_RS06580 Genome accession   NZ_CP172383
Coordinates   1285118..1285633 (-) Length   171 a.a.
NCBI ID   WP_100608832.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH004     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280118..1290633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FQ_RS06565 (ACH6FQ_06565) - 1280228..1282045 (-) 1818 WP_168940138.1 motility associated factor glycosyltransferase family protein -
  ACH6FQ_RS06570 (ACH6FQ_06570) - 1282042..1283865 (-) 1824 WP_168940139.1 motility associated factor glycosyltransferase family protein -
  ACH6FQ_RS06575 (ACH6FQ_06575) - 1283877..1285118 (-) 1242 WP_100608833.1 DUF2920 family protein -
  ACH6FQ_RS06580 (ACH6FQ_06580) ctsG 1285118..1285633 (-) 516 WP_100608832.1 type II secretion system protein Machinery gene
  ACH6FQ_RS06585 (ACH6FQ_06585) tsaD 1285634..1286641 (-) 1008 WP_002912534.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FQ_RS06590 (ACH6FQ_06590) - 1286638..1288032 (-) 1395 WP_038401610.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FQ_RS06595 (ACH6FQ_06595) dxr 1288034..1289104 (-) 1071 WP_100608831.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FQ_RS06600 (ACH6FQ_06600) cdsA 1289101..1289826 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  ACH6FQ_RS06605 (ACH6FQ_06605) - 1289835..1290173 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18686.61 Da        Isoelectric Point: 6.4693

>NTDB_id=1067114 ACH6FQ_RS06580 WP_100608832.1 1285118..1285633(-) (ctsG) [Campylobacter jejuni strain YH004]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFISSSSNKACVILSKNENFKNL
ASKTYLLIGGI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1067114 ACH6FQ_RS06580 WP_100608832.1 1285118..1285633(-) (ctsG) [Campylobacter jejuni strain YH004]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTATAAGCTCTTCTAGTAACAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGCAAAACTTATCTTTTAATAGGGGGAATATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment