Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6FG_RS06565 Genome accession   NZ_CP172381
Coordinates   1281013..1281528 (-) Length   171 a.a.
NCBI ID   WP_100608832.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH007     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1276013..1286528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FG_RS06550 (ACH6FG_06550) - 1276122..1277939 (-) 1818 WP_168940138.1 motility associated factor glycosyltransferase family protein -
  ACH6FG_RS06555 (ACH6FG_06555) - 1277936..1279759 (-) 1824 WP_168940139.1 motility associated factor glycosyltransferase family protein -
  ACH6FG_RS06560 (ACH6FG_06560) - 1279771..1281013 (-) 1243 Protein_1271 DUF2920 family protein -
  ACH6FG_RS06565 (ACH6FG_06565) ctsG 1281013..1281528 (-) 516 WP_100608832.1 type II secretion system protein Machinery gene
  ACH6FG_RS06570 (ACH6FG_06570) tsaD 1281529..1282536 (-) 1008 WP_002912534.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6FG_RS06575 (ACH6FG_06575) - 1282533..1283927 (-) 1395 WP_038401610.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6FG_RS06580 (ACH6FG_06580) dxr 1283929..1284999 (-) 1071 WP_100608831.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6FG_RS06585 (ACH6FG_06585) cdsA 1284996..1285721 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  ACH6FG_RS06590 (ACH6FG_06590) - 1285730..1286068 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18686.61 Da        Isoelectric Point: 6.4693

>NTDB_id=1067058 ACH6FG_RS06565 WP_100608832.1 1281013..1281528(-) (ctsG) [Campylobacter jejuni strain YH007]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFISSSSNKACVILSKNENFKNL
ASKTYLLIGGI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1067058 ACH6FG_RS06565 WP_100608832.1 1281013..1281528(-) (ctsG) [Campylobacter jejuni strain YH007]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTATAAGCTCTTCTAGTAACAAAGCTTGCGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGCAAAACTTATCTTTTAATAGGGGGAATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.398

100

0.924

Multiple sequence alignment