Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   ACH6E8_RS07140 Genome accession   NZ_CP172380
Coordinates   1348930..1349445 (-) Length   171 a.a.
NCBI ID   WP_002903863.1    Uniprot ID   A0AB36G830
Organism   Campylobacter jejuni strain YH008     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1343930..1354445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6E8_RS07125 (ACH6E8_07125) - 1344033..1345850 (-) 1818 WP_021036356.1 motility associated factor glycosyltransferase family protein -
  ACH6E8_RS07130 (ACH6E8_07130) - 1345847..1347670 (-) 1824 WP_115614156.1 motility associated factor glycosyltransferase family protein -
  ACH6E8_RS07135 (ACH6E8_07135) - 1347680..1348930 (-) 1251 WP_002903861.1 DUF2920 family protein -
  ACH6E8_RS07140 (ACH6E8_07140) ctsG 1348930..1349445 (-) 516 WP_002903863.1 type II secretion system protein Machinery gene
  ACH6E8_RS07145 (ACH6E8_07145) tsaD 1349446..1350453 (-) 1008 WP_002889944.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ACH6E8_RS07150 (ACH6E8_07150) - 1350450..1351844 (-) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  ACH6E8_RS07155 (ACH6E8_07155) dxr 1351846..1352916 (-) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  ACH6E8_RS07160 (ACH6E8_07160) cdsA 1352913..1353638 (-) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  ACH6E8_RS07165 (ACH6E8_07165) - 1353647..1353985 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.63 Da        Isoelectric Point: 7.2439

>NTDB_id=1067032 ACH6E8_RS07140 WP_002903863.1 1348930..1349445(-) (ctsG) [Campylobacter jejuni strain YH008]
MKKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYFLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1067032 ACH6E8_RS07140 WP_002903863.1 1348930..1349445(-) (ctsG) [Campylobacter jejuni strain YH008]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATTTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment